| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 25 (0.650) | 20/100 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGC > W3110S.gb/2173500‑2173627 | aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCAt > 1:3490723/1‑71 (MQ=35)aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCAt > 1:408157/1‑71 (MQ=35) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATccc > 1:3512053/1‑70 (MQ=40) cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCt > 1:2828596/1‑71 (MQ=40) ggAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCtt < 1:369119/71‑1 (MQ=255) aCAATTTGAAAACAAGAACCTCGCTTAGGCCTCTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGt < 1:1583496/71‑1 (MQ=255) tttGAAAACAAGAACCTCGCTTAGGCCTGTATCCATATTACGTGGGTAGGATCAg > 1:2625471/1‑55 (MQ=9) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:2417880/69‑1 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:69989/69‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:330020/71‑1 (MQ=255) aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc < 1:2746332/71‑1 (MQ=255) aaCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:3037116/65‑1 (MQ=255) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCt > 1:3073136/1‑71 (MQ=255) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTc > 1:2970677/1‑39 (MQ=40) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt > 1:2448002/1‑57 (MQ=255) gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgccgcc < 1:583412/69‑1 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:1464886/54‑1 (MQ=255) tgtgTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:3567143/47‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCg > 1:1194289/1‑37 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:973907/46‑1 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:2561727/46‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:720143/42‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt < 1:2778064/40‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:1108956/39‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:2980257/43‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:1418991/43‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc > 1:1159494/1‑71 (MQ=255) gTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGc < 1:2072002/71‑1 (MQ=255) | AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGC > W3110S.gb/2173500‑2173627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |