| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 25 (0.650) | 20/100 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
CCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932863‑3933000 | ccaccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTg > 1:1285878/1‑71 (MQ=255) aCCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:1014815‑M2/1‑69 (MQ=255) aCCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:827144‑M2/1‑69 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATc > 1:2153131‑M2/65‑71 (MQ=255) gtgagtcacctctgactgacagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATc > 1:2808115‑M2/65‑71 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATc < 1:536873‑M2/7‑1 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:3481984‑M2/71‑7 (MQ=255) tcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:2739251‑M2/8‑1 (MQ=255) cctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCt < 1:253896‑M2/15‑1 (MQ=255) tctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATc > 1:3590153‑M2/55‑61 (MQ=255) tctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTc > 1:724652‑M2/55‑70 (MQ=255) tCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGAGtgatccta < 1:920759‑M2/62‑9 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:589753‑M2/70‑18 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaa < 1:309592‑M2/23‑1 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaa < 1:61030‑M2/23‑1 (MQ=255) agagtttactcacttagccgcgtgtccactattcctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:3173508‑M2/47‑70 (MQ=255) gagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt < 1:2168193‑M2/26‑1 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:3448164‑M2/53‑6 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacac > 1:3534461‑M2/1‑45 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta > 1:2226909‑M2/1‑45 (MQ=255) tttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:2195796‑M2/63‑20 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCg > 1:1593830‑M2/41‑50 (MQ=255) ataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc < 1:553793‑M2/71‑31 (MQ=255) cttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:50484‑M2/22‑1 (MQ=255) cGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctatg > 1:891768‑M2/1‑36 (MQ=255) gTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:2416706‑M2/1‑35 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGa < 1:3447870‑M2/39‑1 (MQ=255) agccgcgtggccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:397872‑M2/38‑1 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:1921760‑M2/40‑1 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:62029‑M2/40‑1 (MQ=255) cTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctac < 1:3345942‑M2/42‑10 (MQ=255) ggTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:1564721‑M2/1‑31 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcga > 1:2492326‑M2/1‑30 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACgg < 1:1185757‑M2/45‑1 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcga < 1:2072859‑M2/66‑39 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatat < 1:2828941‑M2/48‑21 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct < 1:2437954‑M2/71‑45 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct < 1:3415019‑M2/71‑45 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:1746900‑M2/38‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:2930761‑M2/38‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:2372167‑M2/38‑1 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg < 1:463178‑M2/71‑47 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttctt > 1:2306882‑M2/1‑25 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:3178147‑M2/1‑24 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:1500170‑M2/21‑71 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgt < 1:2879363‑M2/69‑48 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:2277774‑M2/22‑1 (MQ=255) aaaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt < 1:2344735‑M2/71‑51 (MQ=255) aaaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt < 1:1755969‑M2/71‑51 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:3363094‑M2/17‑40 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:1434268‑M2/17‑40 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAg > 1:2259410‑M2/17‑57 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaaa > 1:3577336‑M2/16‑65 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:1416603‑M2/56‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:2802411‑M2/56‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta < 1:631872‑M2/54‑1 (MQ=255) cGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaat < 1:1523607‑M2/71‑56 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaatt < 1:1730154‑M2/71‑57 (MQ=255) gCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattg > 1:3283445‑M2/1‑14 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:3410436‑M2/33‑1 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:3562155‑M2/33‑1 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:3557879‑M2/33‑1 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTtca < 1:182510‑M2/62‑2 (MQ=255) gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa < 1:1619418‑M2/63‑1 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:363136‑M2/8‑71 (MQ=255) gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:2413829‑M2/40‑1 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:95555/38‑1 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa < 1:1514278/71‑1 (MQ=255) gTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa > 1:444728/1‑70 (MQ=255) | CCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932863‑3933000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |