| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 7 (0.180) | 38 (1.050) | 23/94 | NT | 85.3% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
CTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTC > W3110S.gb/2519662‑2519787 | cTGCGTCAATCGAAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCt > 1:2614158/1‑70 (MQ=255) tGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTaa > 1:623598/1‑71 (MQ=255) tCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTa < 1:1618306/71‑1 (MQ=255) aaTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTaa < 1:1053017/70‑1 (MQ=255) aaTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAg > 1:823403/1‑71 (MQ=255) aaTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAg > 1:2771635/1‑71 (MQ=255) aaTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAg > 1:1697092/1‑71 (MQ=255) aCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg < 1:169619/70‑1 (MQ=255) gTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:234315/69‑1 (MQ=255) cTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc > 1:3508346/1‑71 (MQ=255) tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTTGTATTACGCCTg < 1:1748513/71‑1 (MQ=255) tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt > 1:794557/1‑70 (MQ=255) aaGACCATACATAAAAAAGCCGGGGATAATTCCCATAAg > 1:1723939/1‑39 (MQ=255) aGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 1:2118556/1‑70 (MQ=255) cataAAAAAGCCGGTGATAATTCCCATAAGCGCTAACTTAAGGGTtg > 1:3025616/1‑47 (MQ=255) cataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 1:1470430/1‑52 (MQ=255) cataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:61567/70‑1 (MQ=255) cataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:442419/70‑1 (MQ=255) aaaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg > 1:1567741/1‑63 (MQ=255) aaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGt > 1:1307556/1‑41 (MQ=255) aaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg < 1:521880/45‑1 (MQ=255) aaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGc > 1:2481442/1‑71 (MQ=255) gggATAATTCCCATAAGCGCTAACTTAAGGGTtgtg < 1:1028853/36‑1 (MQ=255) gggATAATTCCCATAAGCGCTAACTTAAGGGTtgtg < 1:1887178/36‑1 (MQ=255) ggATAATTCCCATAAGCGCTAACTTAAGGGTtgtg < 1:2921622/35‑1 (MQ=255) aTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg < 1:1826801/50‑1 (MQ=255) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAGCGTGCCGa > 1:275202/1‑61 (MQ=18) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg > 1:3070186/1‑60 (MQ=33) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa > 1:3520363/1‑61 (MQ=33) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa > 1:908606/1‑61 (MQ=33) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc > 1:1293209/1‑71 (MQ=32) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc > 1:1189709/1‑71 (MQ=32) | CTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTC > W3110S.gb/2519662‑2519787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |