| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3874049 | 80 (1.480) | 4 (0.080) | 3/94 | NT | 5.4% | coding (32/843 nt) | yibA | lyase containing HEAT‑repeat |
| ? | W3110S.gb | = 4016519 | 65 (1.280) | pseudogene (12/246 nt) | yrhC | ECK3468:JW5678:b4552; hypothetical protein fragment | |||||
Only 100 of 103 total aligned reads displayed.
AAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCTTTTTTTATCGTTT > W3110S.gb/3873985‑3874119 | aaGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCct > 1:2711596/1‑71 (MQ=34)aaGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCct < 1:3884837/71‑1 (MQ=34) gTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCcttt < 1:901067/71‑1 (MQ=34) tAAGCGAAATAATTCATCATCGTTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCctttc > 1:1939282/1‑71 (MQ=21) aGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACataccagaa > 1:2487804‑M1/1‑60 (MQ=255) gCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCctttcttt < 1:4969614/71‑1 (MQ=34) gCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCctttcttt > 1:2550839/1‑71 (MQ=34) gCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCctttcttt < 1:690048/71‑1 (MQ=34) gCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCctttcttt > 1:408076/1‑71 (MQ=34) gAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCtttcttttc > 1:4372885/1‑71 (MQ=34) aaaTAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCtttcttttct < 1:246314/71‑1 (MQ=34) aataatTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCtttcttttct < 1:4460490/70‑1 (MQ=35) ataatTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTgg < 1:1951634/71‑1 (MQ=34) ataatTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTgg > 1:1867227/1‑71 (MQ=34) taatTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgt < 1:1816124/71‑1 (MQ=34) taatTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgt < 1:4840032/71‑1 (MQ=34) taatTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgt < 1:3573155/71‑1 (MQ=34) atTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtat > 1:617754/1‑71 (MQ=34) atTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtat > 1:3815858/1‑71 (MQ=34) atTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgta > 1:714365/1‑70 (MQ=35) atTCATCATCATTTAGTTTCTTACATTAATTATATAAACCATACTCTTTAC > 1:4590658‑M1/1‑51 (MQ=255) ttCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtatg < 1:532721/71‑1 (MQ=34) tcatcatTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTg < 1:506176/62‑1 (MQ=35) atcatTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTAttt > 1:4084613/1‑70 (MQ=35) atcatTTAGTTTCTTACATTGAATATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtat > 1:4648009/1‑64 (MQ=25) tcatTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:2684786/71‑1 (MQ=34) tcatTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:4605518/71‑1 (MQ=34) atTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCtttcttttct < 1:3265052/56‑1 (MQ=35) atTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCtttcttttct < 1:5084324/56‑1 (MQ=35) atTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgt < 1:1008451/59‑1 (MQ=35) atTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgt < 1:4321727/59‑1 (MQ=35) atTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAc < 1:4840646/70‑1 (MQ=35) atTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAc < 1:1028281/70‑1 (MQ=35) atTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAc < 1:4674365/70‑1 (MQ=35) ttAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCcttt < 1:2275506/47‑1 (MQ=38) ttAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCcttt < 1:5159382/47‑1 (MQ=38) tAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCcttt > 1:1045022/1‑46 (MQ=38) aGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg < 1:154854/70‑1 (MQ=35) aGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg < 1:3564233/70‑1 (MQ=35) gTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg < 1:2263892/69‑1 (MQ=35) gTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg < 1:1811679/69‑1 (MQ=35) gTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGc < 1:5147195/70‑1 (MQ=35) tttCTTACATTGATTATATAAACCATACTCTTTACTTGCctttcttt < 1:950542/47‑1 (MQ=38) tCTTACATTGATTATATAAACCATACTCTTTACataccagaaaagaaaggcaagtaa < 1:1494538‑M1/57‑25 (MQ=255) tCTTACATTGATTATATAAACCATACTCTTTACataccagaaaagaaaggcaagtaa < 1:4303404‑M1/57‑25 (MQ=255) tCTTACATTGATTATATAAACCATACTCTTTACTTg > 1:4885593/1‑36 (MQ=40) tCTTACATTGATTATATAAACCATACTCTTTACTTGc > 1:1088085/1‑37 (MQ=40) tCTTACATTGATTATATAAACCATACTCTTTACTTGCcttt > 1:4253491/1‑41 (MQ=38) tCTTACATTGATTATATAAACCATACTCTTTACTTGCct < 1:662206/39‑1 (MQ=40) tCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAgg > 1:3513375/1‑70 (MQ=35) cTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAgg < 1:4309557/69‑1 (MQ=35) cTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGa < 1:5088723/70‑1 (MQ=35) ttACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg < 1:516154/64‑1 (MQ=35) aCATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa > 1:947946/1‑57 (MQ=35) aTTGATTATATAAACCATACTCTTTACTTGCCtttctttt > 1:1053931/1‑40 (MQ=40) aTTGATTATATAAACCATACTCTTTACTTGCCtttctttt > 1:1622887/1‑40 (MQ=40) aTTGATTATATAAAACATACTCTTTACTTGCCtttctttt > 1:2099501/1‑40 (MQ=255) ttGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgt < 1:587703/44‑1 (MQ=38) tGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtatg < 1:3515022/46‑1 (MQ=35) tGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtatg < 1:5116078/46‑1 (MQ=35) gATTATATAAACGATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCcac < 1:3753533/70‑1 (MQ=18) gATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGaa > 1:5173728/1‑63 (MQ=31) gATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCcac > 1:2707077/1‑70 (MQ=33) gATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCcac < 1:1948376/70‑1 (MQ=33) gATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCcac < 1:1979066/70‑1 (MQ=33) gATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCcac < 1:364440/70‑1 (MQ=33) aTTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCcaca < 1:4776079/70‑1 (MQ=33) aTTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCcaca < 1:560676/70‑1 (MQ=33) tataAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCcac < 1:4691561/65‑1 (MQ=31) aaaCCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACaa > 1:766109/1‑64 (MQ=35) aaaCCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACaa > 1:5203988/1‑64 (MQ=35) aaaCCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACaa > 1:645538/1‑64 (MQ=35) aaaCCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTa > 1:1013738/1‑70 (MQ=40) aaCCATACTCTTTACataccagaaaagaaaggcaagta < 1:2281312‑M1/38‑24 (MQ=255) aaCCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATc > 1:3923552/1‑71 (MQ=39) aCCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAggg > 1:4369740/1‑65 (MQ=40) ccATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCtt > 1:5058451/1‑71 (MQ=39) ccATACTCTATACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCtt > 1:3250754/1‑71 (MQ=255) cATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCttt < 1:3794752/71‑1 (MQ=39) cATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCttt < 1:3511723/71‑1 (MQ=39) aTACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCtttt < 1:4541669/71‑1 (MQ=39) tACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCttttt > 1:1639477/1‑71 (MQ=39) aCTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCtttttt > 1:2360214/1‑71 (MQ=40) ctctTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCtttttt < 1:3326222/70‑1 (MQ=255) tttACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCTTTTTTTATc > 1:1566316/1‑71 (MQ=255) ttACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCTTTTTTTATCg > 1:3425036/1‑71 (MQ=255) ttACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCTTTTTTTATCg > 1:2701517/1‑71 (MQ=255) tACataccagaaaagaaaggcaagtaaagagtatggtttatataataa < 1:339956‑M1/48‑46 (MQ=255) tACataccagaaaagaaaggcaagtaaagagtatggtt < 1:804769‑M1/38‑36 (MQ=255) tACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCTTTTTTTAt < 1:2187400/68‑1 (MQ=255) tACTTGACTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCTTTTTTTATCGt > 1:1631234/1‑71 (MQ=255) aCataccagaaaagaaaggcaagtaaagagtatggtttatataataaatgtaagaaactaaatgatgatg > 1:1999141‑M1/1‑2 (MQ=255) aCTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACaa > 1:259608/1‑50 (MQ=38) aCTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCTTTTTTTATCGt < 1:4908796/70‑1 (MQ=255) cataccagaaaagaaaggcaagtaaagagtatggtttatataataaatgtaagaaactaaatgatgatga < 1:4908508‑M1/70‑70 (MQ=255) cataccagaaaagaaaggcaagtaaagagtatggtttatataataaat > 1:4138320‑M1/1‑1 (MQ=255) cataccagaaaagaaaggcaagtaaagagtatggttta > 1:4835660‑M1/1‑1 (MQ=255) cTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGTAACCTCCACAAGGGCTATCTTTTTTTATCGt < 1:780007/69‑1 (MQ=255) cTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCTTTTTTTATCGttt > 1:518328/1‑71 (MQ=255) cTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCTTTTTTTATCGtt < 1:3270280/70‑1 (MQ=255) | AAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCACAAGGGCTATCTTTTTTTATCGTTT > W3110S.gb/3873985‑3874119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |