| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3874049 | 80 (1.480) | 4 (0.080) | 3/94 | NT | 5.4% | coding (32/843 nt) | yibA | lyase containing HEAT‑repeat |
| ? | W3110S.gb | = 4016519 | 65 (1.280) | pseudogene (12/246 nt) | yrhC | ECK3468:JW5678:b4552; hypothetical protein fragment | |||||
TCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCTGGAGTC > W3110S.gb/4016451‑4016583 | tcatcatcaTTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATg < 1:4908508‑M2/70‑2 (MQ=255) catcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATgt > 1:1999141‑M2/1‑68 (MQ=255) tcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTAtt < 1:2054123/71‑1 (MQ=34) atcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTAttt < 1:2640856/70‑1 (MQ=35) tcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:3509064/71‑1 (MQ=34) tcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:2859458/71‑1 (MQ=34) atTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAc < 1:2717340/70‑1 (MQ=35) tttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACAt > 1:4405665/1‑71 (MQ=34) tttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACAt > 1:922551/1‑71 (MQ=34) ttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAc < 1:43196/68‑1 (MQ=35) tAGTTTCTTACATTTATTATATAAACTATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg > 1:4818618/1‑71 (MQ=21) tAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg > 1:4957467/1‑71 (MQ=34) tAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg > 1:1402986/1‑71 (MQ=34) tAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg > 1:663696/1‑71 (MQ=34) tAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg > 1:219334/1‑71 (MQ=34) aGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg > 1:3977260/1‑70 (MQ=35) aGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg < 1:2130270/70‑1 (MQ=35) tCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTTGTATGTATTTGa < 1:4208681/61‑1 (MQ=25) tCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:4968789/61‑1 (MQ=35) tCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:3102297/61‑1 (MQ=35) cTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtat < 1:176652/52‑1 (MQ=35) cTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtat < 1:2335275/52‑1 (MQ=35) ttACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACa > 1:3160753/1‑61 (MQ=35) ttACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAAc > 1:3070339/1‑71 (MQ=34) aCATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:2035595/57‑1 (MQ=35) aCATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:754331/57‑1 (MQ=35) aCATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCt > 1:2700602/1‑71 (MQ=34) aCATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGAAGGAACCt > 1:2465049/1‑71 (MQ=21) cATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACa > 1:125968/1‑58 (MQ=35) cATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTc < 1:4687121/71‑1 (MQ=34) aTTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATg > 1:4138320‑M2/1‑47 (MQ=255) tttATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACAtt < 1:1854657/58‑1 (MQ=35) tttATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCa > 1:1430478/1‑71 (MQ=34) ttattaTATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATgta < 1:339956‑M2/48‑4 (MQ=255) tattatATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGc > 1:3947380/1‑58 (MQ=31) atataAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAg > 1:1918842/1‑70 (MQ=39) tataAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAgg < 1:766264/70‑1 (MQ=40) tataAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGc > 1:4052941/1‑71 (MQ=39) ataAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGc > 1:2047178/1‑70 (MQ=40) taAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATg > 1:4835660‑M2/1‑37 (MQ=255) aaCCATACTCTTTACTTGCCTTTCTTTTCTGGTATgta < 1:804769‑M2/38‑4 (MQ=255) aaCCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATc > 1:1962956/1‑71 (MQ=39) cATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCttt < 1:3015154/71‑1 (MQ=39) aTACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCtttt > 1:492298/1‑71 (MQ=39) tACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCtttt > 1:765388/1‑70 (MQ=40) ctctTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCt < 1:3301043/71‑1 (MQ=255) tttACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTa < 1:992649/69‑1 (MQ=255) tttACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTa < 1:4636593/69‑1 (MQ=255) tttACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATc > 1:1471679/1‑71 (MQ=255) tttACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATc > 1:4514262/1‑71 (MQ=255) ttACTTGCCTTTCTTTTCTGGTATgtaaagagtatggtttatataatcaatgtaaga < 1:1494538‑M2/57‑34 (MQ=255) ttACTTGCCTTTCTTTTCTGGTATgtaaagagtatggtttatataatcaatgtaaga < 1:4303404‑M2/57‑34 (MQ=255) ttACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCg > 1:3380743/1‑71 (MQ=255) tACTTGCCTTTCTTTTCTGGTATgtaaagagtatggtt < 1:2281312‑M2/38‑16 (MQ=255) tACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCg < 1:3472638/70‑1 (MQ=255) tACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCg < 1:121097/70‑1 (MQ=255) tACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCg < 1:4358181/70‑1 (MQ=255) tACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGt > 1:2143678/1‑71 (MQ=255) tACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGt > 1:2714726/1‑71 (MQ=255) aCTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGt < 1:4621307/70‑1 (MQ=255) cTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGttt < 1:4606870/71‑1 (MQ=255) cTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGttt < 1:2260741/71‑1 (MQ=255) cTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGttt < 1:4304646/71‑1 (MQ=255) cTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGtt < 1:1822561/70‑1 (MQ=255) ttGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCg < 1:2374536/67‑1 (MQ=255) gCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTg < 1:1444583/69‑1 (MQ=255) gCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTg < 1:3836529/69‑1 (MQ=255) gCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTg < 1:2942740/69‑1 (MQ=255) gCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGAc > 1:4661236/1‑71 (MQ=255) ccTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACt < 1:390010/71‑1 (MQ=255) ctttctttTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGAc > 1:1386584/1‑69 (MQ=255) tttcttttctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGt > 1:4483793/1‑71 (MQ=255) ttcttttctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTc > 1:2871450/1‑71 (MQ=255) tcttttctGGTATGTATTTGACATTGCAGGAACCTCCATa > 1:4760781/1‑40 (MQ=37) tcttttctGGTATGTATTTGACATTGCAGGAACCTCCATAAAg > 1:1541818/1‑43 (MQ=255) tcttttctGGTATGTATTTGACATTGCAGGAACCTCCATAAAg > 1:1547804/1‑43 (MQ=255) tcttttctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTc > 1:1516716/1‑55 (MQ=255) tcttttctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCt > 1:4058750/1‑71 (MQ=255) tcttttctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCt > 1:2626245/1‑71 (MQ=255) ttctGGTATgtaaagagtatggtttatataatcaatgtaagaaactaaatgatgatgaattatttcgct > 1:2487804‑M2/1‑9 (MQ=255) ttctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCTgg < 1:3777633/69‑1 (MQ=255) ttctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCTg < 1:3725323/68‑1 (MQ=255) ttctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCTGGAg > 1:1561191/1‑71 (MQ=255) tctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCTg < 1:732764/67‑1 (MQ=255) tctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCTGGAg < 1:24444/70‑1 (MQ=255) tctGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCTGGAg < 1:4724261/70‑1 (MQ=255) ggTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCTGGAg < 1:2636561/67‑1 (MQ=255) tatgtatTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCTGGAGtc < 1:3347338/67‑1 (MQ=255) | TCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTGCAGGAACCTCCATAAAGGCTATCTTTTTCTATCGTTTGACTGTCTGGAGTC > W3110S.gb/4016451‑4016583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |