| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 32 (0.590) | 8 (0.180) | 7/82 | NT | 19.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 40 (0.900) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
AGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAG > W3110S.gb/4547303‑4547441 | ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 1:2487167‑M1/9‑1 (MQ=255)agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1502575/71‑1 (MQ=255) gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1282924/70‑1 (MQ=255) gttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaaa > 1:4210554‑M1/60‑70 (MQ=255) agGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt > 1:3049712/1‑71 (MQ=255) gtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:4246378‑M1/55‑70 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:2846010‑M1/63‑2 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa > 1:1562337/1‑63 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa > 1:1750222/1‑63 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:3969895/1‑70 (MQ=255) cgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat < 1:3798284‑M1/21‑1 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg < 1:5171660‑M1/70‑17 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact > 1:330066‑M1/1‑54 (MQ=255) aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaa < 1:4577698‑M1/71‑19 (MQ=255) ttactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:69069‑M1/27‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:1710272‑M1/52‑1 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat > 1:813322/1‑69 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:1741650/69‑1 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:2895799/1‑71 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt < 1:3963518‑M1/32‑1 (MQ=255) tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt < 1:1592660/70‑1 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa > 1:3550005/1‑67 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa > 1:4130344/1‑63 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:2185199/51‑1 (MQ=255) ataataAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTAc > 1:3882527/1‑71 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa > 1:3196345/1‑61 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:3538594/69‑1 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:3242830/68‑1 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:1019978/1‑71 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:1537853/1‑71 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggaca < 1:2812352‑M1/70‑32 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:775895/71‑1 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt < 1:433395/70‑1 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt < 1:2748955/70‑1 (MQ=255) gcacagttttcccccaaaagatgaaacatTTGGGGCCa < 1:4294740‑M1/9‑1 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc > 1:2954689/1‑41 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa < 1:4005454/38‑1 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt < 1:3986022‑M1/40‑5 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc > 1:2279520/1‑71 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:3651987/71‑1 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttttt < 1:585192‑M1/71‑40 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt < 1:1884801/54‑1 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt < 1:2344500/54‑1 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa < 1:729079/70‑1 (MQ=255) aaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:3091435/45‑1 (MQ=255) cAAATAAATACAAGAGAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt < 1:5106433/71‑1 (MQ=255) aaataaatACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttt < 1:3417443‑M1/71‑46 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa < 1:3640203/64‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCata < 1:102023‑M1/20‑1 (MQ=255) ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:1858624/71‑1 (MQ=255) ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:1866059/71‑1 (MQ=255) ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:78650/71‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTAc > 1:2371401‑M1/15‑49 (MQ=255) aaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:1821072‑M1/14‑71 (MQ=255) aaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:1458250‑M1/14‑71 (MQ=255) aagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:1768475‑M1/37‑1 (MQ=255) agatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata < 1:3829631‑M1/60‑1 (MQ=255) agatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata < 1:3112122‑M1/60‑1 (MQ=255) gatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:957835‑M1/11‑68 (MQ=255) aaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:251396‑M1/7‑48 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggct > 1:1125039‑M1/1‑15 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggct > 1:3546396‑M1/1‑15 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctt < 1:5020505‑M1/71‑58 (MQ=255) gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa > 1:4738235/1‑70 (MQ=255) aacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:2267532‑M1/6‑69 (MQ=255) acatTTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:869311‑M1/5‑36 (MQ=255) catTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:1124123‑M1/4‑61 (MQ=255) catTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa > 1:446528‑M1/4‑69 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa > 1:534296/1‑71 (MQ=255) atTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc > 1:3669058‑M1/3‑71 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa < 1:4289352/67‑1 (MQ=255) ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 1:222860‑M1/68‑60 (MQ=255) ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactt > 1:218319‑M1/1‑9 (MQ=255) ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactt > 1:3741299‑M1/1‑9 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 1:1226216‑M1/67‑60 (MQ=255) GGGGCCAAACTTTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc < 1:3655473‑M1/70‑1 (MQ=255) GGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt < 1:1098789‑M1/41‑1 (MQ=255) cAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattg > 1:4539728‑M1/1‑2 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgt < 1:799180‑M1/52‑52 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttattt < 1:1482439‑M1/50‑50 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAg < 1:4113504‑M1/70‑1 (MQ=255) | AGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAG > W3110S.gb/4547303‑4547441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |