| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 32 (0.590) | 8 (0.180) | 7/82 | NT | 19.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 40 (0.900) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
CAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAA > W3110S.gb/4547600‑4547738 | cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtg > 1:4539728‑M2/1‑69 (MQ=255) tatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaaa < 1:1479671/71‑1 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaa < 1:222860‑M2/68‑10 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcccca < 1:1226216‑M2/67‑9 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg > 1:2115302/1‑71 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg < 1:1751814/71‑1 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:1642972/1‑57 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtc < 1:5020505‑M2/71‑15 (MQ=255) aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtct > 1:3546396‑M2/1‑56 (MQ=255) aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtct > 1:1125039‑M2/1‑56 (MQ=255) aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt > 1:1369318/1‑70 (MQ=255) aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:4526205/69‑1 (MQ=255) gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGttt > 1:3064933/1‑70 (MQ=255) ccAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCa > 1:1756796/1‑71 (MQ=255) caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:2133046/66‑1 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAt < 1:799180‑M2/52‑2 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt < 1:3131456/71‑1 (MQ=255) caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtt > 1:5126457/1‑71 (MQ=255) aaaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAt < 1:1482439‑M2/50‑2 (MQ=255) aaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt < 1:689403/71‑1 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg < 1:629834/71‑1 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt > 1:4783984/1‑57 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt > 1:425023/1‑57 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAAt > 1:685700/1‑57 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 1:3048183/1‑71 (MQ=255) aaaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttattt < 1:3417443‑M2/71‑27 (MQ=255) aaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg < 1:3998782/70‑1 (MQ=255) aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgttttt < 1:585192‑M2/71‑33 (MQ=255) aaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:4446634/1‑38 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt > 1:1993423/1‑51 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaa > 1:218319‑M2/1‑36 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaa > 1:3741299‑M2/1‑36 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg > 1:4965226/1‑71 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg < 1:4930929/71‑1 (MQ=255) ttGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaaa > 1:4758679/1‑42 (MQ=255) tGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactt < 1:2812352‑M2/70‑40 (MQ=255) tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 1:446922/1‑56 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:3252675/70‑1 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:4825226/71‑1 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt > 1:5046707/1‑71 (MQ=255) cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:5077666/71‑1 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:2760676/1‑39 (MQ=255) gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:1569035/1‑39 (MQ=255) cgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg < 1:5138320/71‑1 (MQ=255) gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg > 1:2720308/1‑69 (MQ=255) aTGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCa < 1:3154263/40‑1 (MQ=255) aTGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCa < 1:3067021/40‑1 (MQ=255) gCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg > 1:1972412/1‑66 (MQ=255) gCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 1:4112760/1‑71 (MQ=255) gCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 1:4215309/1‑71 (MQ=255) cTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 1:251122/1‑70 (MQ=255) ttCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagt < 1:4577698‑M2/71‑54 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCa > 1:2280086/1‑56 (MQ=255) ccTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagtt < 1:5171660‑M2/70‑55 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:609825/1‑71 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:4849380/1‑71 (MQ=255) ctATGAGTCAAAATGGCCCCAAATGTTTCATCtttt > 1:2027780/1‑36 (MQ=255) tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg < 1:4102019/49‑1 (MQ=255) tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg < 1:2083327/49‑1 (MQ=255) tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt > 1:99645/1‑71 (MQ=255) aTGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 1:997453/1‑36 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaaa > 1:357763/1‑42 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt > 1:2043980/1‑70 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt < 1:2543926/70‑1 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt < 1:2162416/70‑1 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt < 1:4914626/70‑1 (MQ=255) gAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaaa > 1:3496878/1‑41 (MQ=255) gAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGa > 1:1710296/1‑38 (MQ=255) aGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagtt > 1:330066‑M2/1‑8 (MQ=255) tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg < 1:4555295/55‑1 (MQ=255) tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg < 1:1030452/55‑1 (MQ=255) aaaatggccccaattgtcttgtatttatttgtttttttaa < 1:3986022‑M2/40‑37 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:4963708/1‑71 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc > 1:3878143/1‑40 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc > 1:1744503/1‑40 (MQ=255) aaTGCCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 1:2920087/71‑1 (MQ=255) atggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaa < 1:2846010‑M2/63‑63 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc < 1:4906745/39‑1 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc < 1:2957300/39‑1 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCTTTTacaaaacaa < 1:319047/71‑1 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca > 1:2827357/1‑70 (MQ=255) | CAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAA > W3110S.gb/4547600‑4547738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |