| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 74 (1.370) | 89 (1.640) | 47/100 | NT | 55.1% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 71 (1.310) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 206 total aligned reads displayed.
GATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > W3110S.gb/713885‑714024 | acacATCATGCAGTCGTTGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg > 1:1450828/1‑71 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg > 1:1481901/1‑71 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg < 1:3743554/71‑1 (MQ=255) acaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa < 1:1493050/62‑1 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:2339941‑M1/71‑12 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:2067321‑M1/70‑12 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:4435685‑M1/66‑8 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat > 1:4263640‑M1/1‑57 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat < 1:2592769‑M1/71‑15 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggc > 1:3035936‑M1/1‑57 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAga > 1:2659174/1‑68 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAg < 1:3936644/67‑1 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:1719729‑M1/63‑8 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:1709012‑M1/63‑8 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaa < 1:1476771/71‑1 (MQ=255) cAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaag < 1:3085198/70‑1 (MQ=255) cGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:3205012‑M1/1‑50 (MQ=255) cGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:2931211/1‑70 (MQ=255) tGCAATTCCCGGCGGAGTTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:2715243/71‑1 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac > 1:2540763‑M1/1‑47 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:3171440/71‑1 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:3658833/71‑1 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacc > 1:4569847‑M1/1‑45 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatta < 1:1597290‑M1/55‑13 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat < 1:2887172‑M1/56‑15 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaa > 1:4108498/1‑42 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaa > 1:382318‑M1/1‑41 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg > 1:4379143/1‑48 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:1010150‑M1/1‑40 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaat > 1:1522430‑M1/1‑40 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgaca > 1:1284339/1‑53 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgg < 1:2942580‑M1/71‑33 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:4277601‑M1/70‑32 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:397448‑M1/71‑34 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:1169717‑M1/71‑34 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:391245‑M1/71‑34 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataaccaaatgga < 1:3998376‑M1/71‑34 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga > 1:3490923‑M1/1‑37 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:47905/60‑1 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATc > 1:3573656/1‑70 (MQ=255) cggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaat > 1:5200128‑M1/1‑35 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac < 1:217868/71‑1 (MQ=255) gAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggata < 1:3243634‑M1/68‑36 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt > 1:4295826‑M1/1‑30 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:5132114‑M1/1‑30 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaat > 1:1939050‑M1/1‑30 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaat > 1:1388361‑M1/1‑30 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaatta < 1:4707087‑M1/42‑13 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggcagaaattaatgaggtcataccaaaatggatagttcgt < 1:2418740‑M1/71‑42 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATc < 1:4966216/71‑1 (MQ=255) tgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCg > 1:1584330/1‑71 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:4742879‑M1/70‑43 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTg > 1:750378/1‑35 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt > 1:3289015/1‑71 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg < 1:4233369/71‑1 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg < 1:4178396/71‑1 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGc < 1:527317/71‑1 (MQ=255) tgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg < 1:1778687/69‑1 (MQ=255) gagaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgc > 1:2202252‑M1/1‑24 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg > 1:2109354/1‑68 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAg > 1:1335202/1‑71 (MQ=255) agaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgc < 1:421826‑M1/70‑48 (MQ=255) gaAGGTTTGCGGAACTATCTAAAACGTTGCAgacaa < 1:2676648/36‑1 (MQ=255) gTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaa < 1:759800‑M1/46‑29 (MQ=255) tttGCGGAACTATCTAAcggctgaaattaatgaggt < 1:1132727‑M1/36‑20 (MQ=255) tttGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:2294426/37‑1 (MQ=255) tttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa < 1:4882256/63‑1 (MQ=255) tGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:3717814‑M1/42‑28 (MQ=255) tGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:4157470‑M1/1‑15 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:4804421/1‑41 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa > 1:4132210/1‑61 (MQ=255) gCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaac < 1:3432099‑M1/70‑57 (MQ=255) ggAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaa > 1:2413969‑M1/1‑12 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac > 1:2768799/1‑70 (MQ=255) aaCTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:2383860‑M1/67‑58 (MQ=255) aaCTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgccca < 1:1396923‑M1/60‑51 (MQ=255) aaCTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:4631742‑M1/1‑10 (MQ=255) aaCTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa < 1:3513722/71‑1 (MQ=255) aCTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgc > 1:2252472‑M1/1‑9 (MQ=255) cTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgct < 1:2091554‑M1/71‑64 (MQ=255) cTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgc > 1:3681645‑M1/1‑8 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa > 1:2603827/1‑54 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:1243961/1‑69 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:4096869/1‑69 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:598064/1‑69 (MQ=255) tATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:1872461‑M1/64‑58 (MQ=255) aTCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgcta > 1:1381191‑M1/1‑6 (MQ=255) aTCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:3475058‑M1/1‑6 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaaca > 1:1982558/1‑69 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaa > 1:5073786‑M1/1‑5 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:858806‑M1/1‑5 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:607237‑M1/1‑5 (MQ=255) cTAAcggctgaaattaatgaggtcatacccaaatgtatagttcgtttacgcccattgaacaaatgctaaa < 1:1083785‑M1/70‑67 (MQ=255) cTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaa < 1:512708‑M1/70‑67 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac < 1:643335/40‑1 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGc < 1:883128/60‑1 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGt > 1:805683/1‑70 (MQ=255) aaaaCGTTGCAGACAAAGGACAAAGAAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACaga > 1:3951573/1‑67 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaattt > 1:4476517‑M1/1‑1 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa > 1:547741/1‑40 (MQ=255) | GATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > W3110S.gb/713885‑714024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |