| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 49 (0.840) | 22 (0.460) | 7/82 | NT | 37.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 35 (0.730) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
CTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4547441‑4547364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > W3110S.gb/4547678‑4547744 CTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTG < 1:784798/71‑1CTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTG < 1:4382129/71‑1CTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTG < 1:3078189/71‑1CTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTG < 1:2462620/71‑1 TTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGC > 1:2007283/1‑71 GTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAA < 1:3121586/70‑1 TATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAAT < 1:4761306/62‑1 TATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAAT < 1:187697/62‑1 TATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAAT < 1:4092634/62‑1 TATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAAT < 1:3019690/62‑1 ATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAAT < 1:987404/61‑1 AAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGC < 1:1195727/71‑1 AAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGC < 1:1946900/71‑1 AAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTC < 1:4407037/49‑1 AAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTC < 1:3257124/49‑1 AATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCAT > 1:4834026/1‑49 AATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCAT > 1:2951654/1‑49 AATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCAT > 1:568366/1‑49 AATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCAT > 1:3716886/1‑49 AATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCAT > 1:49762/1‑49 AATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCAT > 1:5215142/1‑49 AATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTC > 1:1272018/1‑47 AATACGTAACTTATTTATGATATGGACAGTTTGGCCCC > 1:5272006/1‑38 TACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTG < 1:3306731/53‑1 TACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTG < 1:3748060/53‑1 TACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTG < 1:5041516/53‑1 TACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTG < 1:2802176/53‑1 TACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTG < 1:2713065/53‑1 CGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGA < 1:3809133/56‑1 TGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCTAACT < 1:2047161/70‑1 TGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTC < 1:754812/71‑1 TGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTC < 1:907358/71‑1 TGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACT < 1:1123938/70‑1 TGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACT < 1:5482340/70‑1 GTTTGGCCCCAAATGTTTAATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAA > 1:2520602/1‑70 TTTGGCCCCAAATGTTTCATCTTTTGGGGG‑AAACTGTGCAG < 1:4248919/41‑1 TTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAca > 1:1259092/1‑67 TTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACA > 1:310466/1‑70 CCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTG < 1:3415624/71‑1 CCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTG < 1:3327445/71‑1 CCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTG < 1:2801658/70‑1 CAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > 1:2077625/1‑70 CAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > 1:1972738/1‑70 CAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > 1:5421632/1‑70 CAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > 1:3329179/1‑70 CAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > 1:4983597/1‑70 CAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > 1:3825548/1‑70 CAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > 1:1502020/1‑70 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > 1:4285014/1‑68 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCA > 1:196820/1‑40 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCA > 1:4935607/1‑40 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCA > 1:623425/1‑40 AATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCA > 1:3981469/1‑40 CTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4547441‑4547364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > W3110S.gb/4547678‑4547744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |