| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 49 (0.840) | 22 (0.460) | 7/82 | NT | 37.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 35 (0.730) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
Only 100 of 117 total aligned reads displayed.
AAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA > W3110S.gb/4547297‑4547434 | tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt > 1:4285014‑M1/68‑68 (MQ=255)tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg > 1:3329179‑M1/68‑70 (MQ=255)tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg > 1:3825548‑M1/68‑70 (MQ=255)tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg > 1:4983597‑M1/68‑70 (MQ=255)tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg > 1:1502020‑M1/68‑70 (MQ=255)tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg > 1:5421632‑M1/68‑70 (MQ=255)tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTg > 1:2077625‑M1/68‑70 (MQ=255) cactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg < 1:3327445‑M1/6‑1 (MQ=255) cactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg < 1:3415624‑M1/6‑1 (MQ=255) cactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg < 1:2801658‑M1/5‑1 (MQ=255) aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGC > 1:4521887‑M1/1‑71 (MQ=255) agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1029533/71‑1 (MQ=255) agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:3753244/71‑1 (MQ=255) agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:433723/71‑1 (MQ=255) agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1385756/71‑1 (MQ=255) tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:310466‑M1/61‑70 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagattaaacatTTGGGGCCAAAc > 1:2520602‑M1/59‑70 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT > 1:308516‑M1/1‑53 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:1303459/1‑71 (MQ=255) gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactca > 1:1270011‑M1/1‑59 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 1:598061/71‑1 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 1:3119636/71‑1 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 1:2683479/71‑1 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 1:3502789/71‑1 (MQ=255) gagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCa < 1:907358‑M1/23‑1 (MQ=255) gagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCa < 1:754812‑M1/23‑1 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCa < 1:1123938‑M1/23‑1 (MQ=255) agttagactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCa < 1:2047161‑M1/23‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat < 1:730710/71‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat < 1:3019353/71‑1 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa > 1:5341213/1‑70 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaag < 1:2638411‑M1/69‑21 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaag < 1:2020451‑M1/69‑21 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatt > 1:623425‑M1/40‑40 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatt > 1:4935607‑M1/40‑40 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatt > 1:3981469‑M1/40‑40 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatt > 1:196820‑M1/40‑40 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGtt > 1:5418901/1‑70 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa > 1:3707886/1‑71 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA > 1:1651175‑M1/1‑46 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgg > 1:4322875‑M1/1‑42 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa > 1:3214292/1‑42 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa > 1:5476015/1‑42 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa > 1:864633/1‑42 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa > 1:2252463/1‑42 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa > 1:175091/1‑42 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa > 1:5435568/1‑42 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaat > 1:953978/1‑59 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:2362896/1‑71 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:3674991/1‑71 (MQ=255) ctgcacagtttcccccaaaagatgaaacatTTGGGGCCaaa < 1:4248919‑M1/11‑1 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa > 1:922852/1‑56 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa > 1:4266481/1‑56 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa > 1:2925530/1‑56 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata > 1:3522786/1‑55 (MQ=255) gcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:1946900‑M1/42‑1 (MQ=255) gcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:1195727‑M1/42‑1 (MQ=255) tcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:3809133‑M1/36‑1 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 1:25923/1‑67 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 1:4279803/1‑67 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 1:3978489/1‑67 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 1:3954474/1‑67 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 1:3006957/1‑67 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 1:3947857/1‑67 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTATCaa > 1:2487976/1‑67 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:1774345/45‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:2588002/45‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:3457856/45‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:347271/45‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:2904068/45‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:1414666/45‑1 (MQ=255) aataaataCAAGACAATTGGAGCCAAACTGTCCATATCataaata < 1:4542165/45‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:2802176‑M1/38‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:2713065‑M1/38‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:3306731‑M1/38‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:3748060‑M1/38‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:5041516‑M1/38‑1 (MQ=255) taaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatt < 1:586466‑M1/71‑49 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:87837/1‑45 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:101639/1‑70 (MQ=255) atgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:4834026‑M1/10‑49 (MQ=255) atgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:49762‑M1/10‑49 (MQ=255) atgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:5215142‑M1/10‑49 (MQ=255) atgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:3716886‑M1/10‑49 (MQ=255) atgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:568366‑M1/10‑49 (MQ=255) gaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:3257124‑M1/42‑1 (MQ=255) gaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:4407037‑M1/42‑1 (MQ=255) gaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:1272018‑M1/8‑47 (MQ=255) gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa > 1:2595445/1‑70 (MQ=255) cAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa > 1:4694689‑M1/1‑12 (MQ=255) cAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa > 1:3730125‑M1/1‑12 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa > 1:1148383/1‑71 (MQ=255) atTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata < 1:187697‑M1/60‑1 (MQ=255) atTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata < 1:3019690‑M1/60‑1 (MQ=255) atTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata < 1:4761306‑M1/60‑1 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaata < 1:1108311‑M1/71‑62 (MQ=255) ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat > 1:4632132‑M1/1‑9 (MQ=255) ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat > 1:2164883‑M1/1‑9 (MQ=255) ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat > 1:4713565‑M1/1‑9 (MQ=255) ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat > 1:3151926‑M1/1‑9 (MQ=255) | AAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGA > W3110S.gb/4547297‑4547434 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |