| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 41 (0.700) | 93 (1.660) +TC |
24/96 | NT | 82.5% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 201 total aligned reads displayed.
TGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314387‑314521 | tGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:4343587/1‑71 (MQ=255) aaGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAg > 1:4831206/1‑71 (MQ=255) ggtataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGc > 1:2820601‑M1/61‑71 (MQ=255) ggtatagggtttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCt > 1:4328815‑M1/61‑63 (MQ=255) aGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAg > 1:3297136/1‑70 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:3455463‑M1/59‑71 (MQ=255) ataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa < 1:1313345‑M1/13‑1 (MQ=255) taggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa < 1:3164623‑M1/13‑1 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa > 1:2842540‑M1/54‑68 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATa > 1:228879‑M1/54‑68 (MQ=255) tttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGt < 1:4878970‑M1/17‑1 (MQ=255) ttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:3255507‑M1/20‑1 (MQ=255) ttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:2031217‑M1/20‑1 (MQ=255) aGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGaca > 1:4064758/1‑71 (MQ=255) aGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGaca > 1:1048667/1‑71 (MQ=255) gAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGacac > 1:2703748/1‑71 (MQ=255) gAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGacac > 1:1977352/1‑71 (MQ=255) accgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGaca > 1:2593800‑M1/49‑70 (MQ=255) accgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGaca > 1:1652750‑M1/49‑70 (MQ=255) aaGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcgc < 1:1123198/71‑1 (MQ=255) aaGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcgc < 1:4261057/71‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:2791661‑M1/20‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:5016896‑M1/20‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:5026551‑M1/20‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:1799731‑M1/20‑1 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGa < 1:1244415‑M1/20‑1 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgat < 1:3577796‑M1/1‑1 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCATTAGTGGACACGCGGctt > 1:1776026‑M1/41‑69 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:2912286‑M1/41‑69 (MQ=255) cgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCt > 1:3695184‑M1/41‑69 (MQ=255) cATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt < 1:1708148/52‑1 (MQ=255) aTGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt < 1:4538613/51‑1 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:1858558/1‑39 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:2251856/1‑39 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:3267688/1‑39 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:451345/1‑39 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:1186593/1‑43 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCa > 1:2468816/1‑43 (MQ=255) cTATTTCTGCCGAGGTGAACTATACTCCAGTGCCTCTTAcca > 1:3067567/1‑41 (MQ=38) cTATTTCTGCCGAGGTGAACTATACGCCAGTGCCTCTTACCCa > 1:2396770/1‑43 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt < 1:4871871/45‑1 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGCCACGCGGCTAAGTGAGTaaa < 1:39760‑M1/40‑1 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGc < 1:3635351‑M1/28‑1 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:4372141‑M1/40‑1 (MQ=255) cccacttttcagcgaggcccgcgatcactgaTCTTACCCAGCAATAGTGGACACGCGGc < 1:448468‑M1/28‑1 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAg > 1:5364001/1‑45 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAg > 1:1581026/1‑45 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAg > 1:5067669/1‑45 (MQ=255) ttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:4307771‑M1/27‑40 (MQ=255) ttttcagcgaggcccgggatcactgaTCTTACCCAGCAAt > 1:3508597‑M1/27‑40 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGt < 1:3072299‑M1/17‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGt < 1:1803985‑M1/17‑1 (MQ=255) cgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca > 1:2654721‑M1/20‑69 (MQ=255) gcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:2987320‑M1/55‑1 (MQ=255) ccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:2329274‑M1/14‑71 (MQ=255) ttaatcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:1998868‑M1/13‑71 (MQ=255) ttaatcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:543152‑M1/13‑71 (MQ=255) ttaatcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:1744833‑M1/59‑1 (MQ=255) ttaatcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:484489‑M1/59‑1 (MQ=255) ttaatcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:5568939‑M1/13‑71 (MQ=255) ttaatcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 1:2780921‑M1/13‑71 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:4721270‑M1/51‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:1061241‑M1/61‑1 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:4018046‑M1/61‑1 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:2086723/1‑71 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:2205252‑M1/63‑1 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 1:2878291‑M1/62‑1 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 1:1109654‑M1/62‑1 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 1:5408687‑M1/62‑1 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 1:4916183‑M1/62‑1 (MQ=255) atcactgaTCTTACCCAGCAATAGTGGACACGAGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:2491251‑M1/63‑1 (MQ=255) tcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 1:2518047‑M1/8‑71 (MQ=255) actgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg < 1:5288133‑M1/54‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 1:741398‑M1/35‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 1:115240‑M1/35‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:2983115‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:1347249‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:3425327‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:652085‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:465717‑M1/66‑1 (MQ=255) ctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:4182828‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:3829783‑M1/4‑42 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:1002268‑M1/4‑42 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:3108962‑M1/4‑55 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:1911729‑M1/4‑55 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga > 1:5107807‑M1/4‑55 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:825646‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:5484512‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:3961158‑M1/66‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:2342378‑M1/67‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:1835967‑M1/53‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:3790539‑M1/53‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:5380983‑M1/68‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:4411334‑M1/68‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:1554571‑M1/43‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:1499908‑M1/41‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:1723331‑M1/41‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa > 1:1036509‑M1/2‑70 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa > 1:2676637‑M1/2‑70 (MQ=255) aTCTTACACAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:902970‑M1/41‑1 (MQ=255) | TGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314387‑314521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |