| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 41 (0.700) | 93 (1.660) +TC |
24/96 | NT | 82.5% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 165 total aligned reads displayed.
GCACCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932860‑3932998 | gCACCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGaa < 1:409201/71‑1 (MQ=255)gCACCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGaa < 1:3250761/71‑1 (MQ=255) gtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatca < 1:3459938‑M2/1‑1 (MQ=255) gtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatca < 1:2885538‑M2/1‑1 (MQ=255) gtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatca < 1:149595‑M2/1‑1 (MQ=255) tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatca < 1:3961158‑M2/1‑1 (MQ=255) tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatca < 1:5484512‑M2/1‑1 (MQ=255) tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg < 1:4182828‑M2/2‑1 (MQ=255) tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg < 1:465717‑M2/2‑1 (MQ=255) tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg < 1:3425327‑M2/2‑1 (MQ=255) tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg < 1:1347249‑M2/2‑1 (MQ=255) tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg < 1:652085‑M2/2‑1 (MQ=255) tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg < 1:2983115‑M2/2‑1 (MQ=255) accaccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCAACGAAGt > 1:5194086/1‑71 (MQ=255) cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:1921086‑M2/1‑70 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaagt < 1:3964981‑M2/4‑4 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGtgt > 1:2276773‑M2/67‑70 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa > 1:82394‑M2/67‑71 (MQ=255) tgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:2205252‑M2/6‑1 (MQ=255) tgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:2212555‑M2/6‑1 (MQ=255) tgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:4974433‑M2/6‑1 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:4486655‑M2/6‑1 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:1690425‑M2/6‑1 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:1109654‑M2/6‑1 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:4916183‑M2/6‑1 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:5408687‑M2/6‑1 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:4018046‑M2/8‑1 (MQ=255) gagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:1736519‑M2/7‑2 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:2686840‑M2/71‑6 (MQ=255) gagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:2493449‑M2/8‑1 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:484489‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:306742‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa > 1:5568939‑M2/63‑68 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa > 1:1981386‑M2/63‑68 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa > 1:1998868‑M2/63‑68 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCgg > 1:2329274‑M2/61‑71 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGc < 1:2987320‑M2/13‑1 (MQ=255) tctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatca > 1:5107807‑M2/55‑55 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:4721270‑M2/8‑1 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCg > 1:2654721‑M2/53‑69 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:4523839‑M2/53‑71 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:5337579‑M2/70‑16 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:3828739‑M2/1‑50 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:1804169‑M2/1‑50 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1277964‑M2/29‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:4372141‑M2/29‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:3814626‑M2/29‑1 (MQ=255) ttactcacttagccgcgtgtccactattgctgggtaagatca > 1:1002268‑M2/42‑42 (MQ=255) tttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:3045724‑M2/1‑44 (MQ=255) tcacttagccgcgtgtccactattgctgggtaagatcAg < 1:741398‑M2/2‑1 (MQ=255) tcacttagccgcgtgtccactattgctgggtaagatcAg < 1:115240‑M2/2‑1 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:248660‑M2/36‑71 (MQ=255) ccGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:2950191‑M2/1‑37 (MQ=255) ccGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:2412792‑M2/1‑37 (MQ=255) ccGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:1557806‑M2/1‑37 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:4427533‑M2/33‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:1060550‑M2/33‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:2783708‑M2/33‑70 (MQ=255) aagccgcgtgtccactaatgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:1776026‑M2/33‑70 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:3695184‑M2/32‑69 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:4821196‑M2/32‑69 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:2912286‑M2/32‑69 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:3635351‑M2/29‑1 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:3143268‑M2/71‑40 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:2690483‑M2/71‑40 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:4228427‑M2/71‑40 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggt < 1:4142477‑M2/71‑42 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggt < 1:350777‑M2/71‑42 (MQ=255) tgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt > 1:1652750‑M2/25‑70 (MQ=255) tgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt > 1:2593800‑M2/25‑70 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:5018230‑M2/40‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:5026551‑M2/40‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:1799731‑M2/40‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:2031217‑M2/48‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:1803985‑M2/22‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:2808793‑M2/49‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:4878970‑M2/49‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:4123206‑M2/22‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:2842540‑M2/18‑68 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:5425074‑M2/18‑68 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:3081620‑M2/18‑68 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:5179316‑M2/18‑68 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:2562522‑M2/18‑68 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:1773026‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:908151‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:4865898‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:1313345‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:3338123‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta < 1:3164623‑M2/54‑1 (MQ=255) tgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAc > 1:2029635‑M2/15‑71 (MQ=255) gctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAcc > 1:2820601‑M2/14‑71 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaat > 1:573571‑M2/1‑15 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaat > 1:1248584‑M2/1‑15 (MQ=255) gCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcga < 1:1106359‑M2/52‑39 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAACCCTATAcc > 1:4328815‑M2/6‑63 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAcc > 1:4399346‑M2/6‑63 (MQ=255) atcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:3577796‑M2/38‑1 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:485623‑M2/3‑71 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:3342622‑M2/48‑1 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGAc < 1:3764914/43‑1 (MQ=255) | GCACCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932860‑3932998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |