| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 87 (1.490) | 87 (1.490) | 21/100 | NT | 47.2% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 108 (1.850) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 252 total aligned reads displayed.
GATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > W3110S.gb/713885‑714024 | gATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa > 1:3336962/1‑70 (MQ=255) aTCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaaa > 1:4316065/1‑71 (MQ=255) aTCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcg > 1:3944880‑M1/1‑69 (MQ=255) aTCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTGTGCGGAACTATCTaaaa > 1:4309567/1‑71 (MQ=255) aTCGAACACATCATGCAGTCGATGCAATTCCCGG‑GGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAAc > 1:2839247/1‑71 (MQ=255) cGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg > 1:2230390/1‑71 (MQ=255) cGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg > 1:2419683/1‑71 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:2030486‑M1/71‑8 (MQ=255) catcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaat < 1:4743646‑M1/71‑11 (MQ=255) catcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaat < 1:1814160‑M1/71‑11 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:1411653‑M1/71‑12 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:3106749‑M1/71‑12 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatta < 1:3568456‑M1/71‑13 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:3711273‑M1/70‑12 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat < 1:976728‑M1/71‑15 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgaca > 1:1868343/1‑70 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTCCGGAACTATCTAAcggctgaaattaat < 1:5016523‑M1/71‑15 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat < 1:4924824‑M1/70‑15 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:3765010/1‑69 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:2623773/1‑69 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:2291692/1‑69 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac > 1:1911306‑M1/1‑47 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac > 1:3147038‑M1/1‑47 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac > 1:950730‑M1/1‑47 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac > 1:2945645‑M1/1‑47 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:4936925/71‑1 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:5582516/71‑1 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaag < 1:3433334/62‑1 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaag < 1:90376/62‑1 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaag < 1:3080509/62‑1 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc > 1:1078978/1‑70 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacc > 1:2638062‑M1/1‑45 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacc > 1:5187528‑M1/1‑45 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt < 1:1445970‑M1/53‑12 (MQ=255) ttCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg > 1:3221620/1‑71 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGc < 1:2863341/70‑1 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGc < 1:410276/70‑1 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTaa > 1:3349355/1‑36 (MQ=255) cggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:4555063/59‑1 (MQ=255) aaTTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagtt < 1:3036176‑M1/70‑39 (MQ=255) aaTTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagtt < 1:1560924‑M1/70‑39 (MQ=255) aaTTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:3431881‑M1/59‑28 (MQ=255) aaTTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa < 1:2511789/71‑1 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:4574786‑M1/1‑31 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:1855213‑M1/1‑31 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:4420951‑M1/1‑31 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:5562989‑M1/1‑31 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa < 1:4761495/70‑1 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac < 1:2539371‑M1/54‑25 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac < 1:3772711‑M1/54‑25 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaa > 1:3610207‑M1/1‑30 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaa > 1:1275226‑M1/1‑30 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCa < 1:4474064/39‑1 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCa < 1:4046533/39‑1 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCa < 1:1506841/39‑1 (MQ=255) ttgatt‑agAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCg < 1:4259116/71‑1 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCg < 1:1980867/70‑1 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCg < 1:3870411/70‑1 (MQ=255) ggTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCaa > 1:4587208/1‑71 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:1189193/1‑42 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:4158069/1‑42 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:1752574/1‑42 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:3177795/1‑42 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:5320213/1‑42 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:349120/1‑42 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:3674798/1‑42 (MQ=255) tGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:3885171‑M1/1‑15 (MQ=255) tGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:1643858‑M1/1‑15 (MQ=255) tGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:5444717‑M1/1‑15 (MQ=255) gAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaat > 1:3805701‑M1/1‑11 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcaca < 1:1657034/71‑1 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcaca < 1:4680095/71‑1 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaaca > 1:798112/1‑69 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattg < 1:438357‑M1/58‑54 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattg < 1:1353163‑M1/58‑54 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa < 1:2692641/44‑1 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa < 1:382378/44‑1 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac < 1:2766893/64‑1 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac < 1:3906654/64‑1 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac < 1:2062132/64‑1 (MQ=255) cTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac < 1:4969545/41‑1 (MQ=255) cTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac < 1:4249954/41‑1 (MQ=255) cTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac < 1:100922/41‑1 (MQ=255) cTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac < 1:5426564/41‑1 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaat > 1:11563‑M1/1‑3 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaat > 1:4465432‑M1/1‑3 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatgga > 1:1245343‑M1/1‑3 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatgga > 1:470820‑M1/1‑3 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatgga > 1:685984‑M1/1‑3 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatgg < 1:4863339‑M1/35‑33 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatgg < 1:1586103‑M1/35‑33 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatgg < 1:5600680‑M1/35‑33 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATc > 1:4167085/1‑44 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATc > 1:4787427/1‑44 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATc > 1:588140/1‑44 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:4642121/1‑64 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:859266/1‑64 (MQ=255) tAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:5364876/1‑64 (MQ=255) aaaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGtga > 1:4845449/1‑71 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGtgat > 1:3074687/1‑71 (MQ=255) | GATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > W3110S.gb/713885‑714024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |