| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 0 (0.000) | 34 (0.610) | 11/96 | NT | 100% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
Only 100 of 149 total aligned reads displayed.
AACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGC > W3110S.gb/2018516‑2018653 | aaCGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCata < 1:314322‑M1/71‑4 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTcc > 1:3998166‑M1/54‑70 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa < 1:1097470‑M1/18‑1 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa < 1:5585879‑M1/18‑1 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa < 1:4693649‑M1/18‑1 (MQ=255) ttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTgg < 1:5464977‑M1/24‑1 (MQ=255) ttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTgg < 1:2345186‑M1/24‑1 (MQ=255) gatgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgcta < 1:2140620‑M1/70‑11 (MQ=255) taaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggc < 1:3639909‑M1/25‑1 (MQ=255) taaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggc < 1:4761521‑M1/25‑1 (MQ=255) taaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggc < 1:2700138‑M1/25‑1 (MQ=255) taaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggc < 1:2273537‑M1/25‑1 (MQ=255) aaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcg < 1:871254‑M1/26‑1 (MQ=255) atatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTg < 1:3511503‑M1/30‑1 (MQ=255) atatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTg < 1:456309‑M1/30‑1 (MQ=255) atatcaggagtaataccacaacccttaagttagcgcttatGGGCGATACCACCCTCCATcc < 1:376367‑M1/21‑1 (MQ=255) tcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc > 1:2496798‑M1/38‑53 (MQ=255) tcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc > 1:1485484‑M1/38‑53 (MQ=255) tcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa > 1:2923108‑M1/38‑71 (MQ=255) caggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa > 1:775285‑M1/37‑70 (MQ=255) ggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtc > 1:4432160‑M1/35‑71 (MQ=255) ggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtc > 1:525315‑M1/35‑71 (MQ=255) ggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtc > 1:3488040‑M1/35‑71 (MQ=255) ggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtc > 1:4019166‑M1/35‑71 (MQ=255) gcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtc > 1:5450224‑M1/34‑70 (MQ=255) gcgtaataccacaaaccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtct > 1:520080‑M1/34‑71 (MQ=255) cgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc > 1:56031‑M1/33‑48 (MQ=255) taataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa > 1:1460579‑M1/31‑48 (MQ=255) taataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa > 1:45530‑M1/31‑48 (MQ=255) taataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa > 1:4498212‑M1/31‑48 (MQ=255) taataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa > 1:1182605‑M1/31‑48 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatct > 1:4359233‑M1/1‑41 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatct > 1:1739668‑M1/1‑41 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATc < 1:4127025‑M1/20‑1 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATc < 1:125015‑M1/20‑1 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATc < 1:883457‑M1/20‑1 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg < 1:244540‑M1/61‑23 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg < 1:3289185‑M1/61‑23 (MQ=255) accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa < 1:4362361‑M1/34‑1 (MQ=255) accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa < 1:3244789‑M1/34‑1 (MQ=255) accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTaaa < 1:3459130‑M1/34‑1 (MQ=255) accacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGa < 1:5101806‑M1/45‑1 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:2812257‑M1/1‑38 (MQ=255) cacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:4599516‑M1/25‑71 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg > 1:5019284‑M1/1‑37 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg > 1:4932644‑M1/1‑37 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg > 1:2606800‑M1/1‑37 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg > 1:218128‑M1/1‑37 (MQ=255) acaccccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTctccgcag < 1:228695‑M1/44‑3 (MQ=255) tttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactt < 1:5470605‑M1/48‑15 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:4255243‑M1/70‑40 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:2807654‑M1/70‑40 (MQ=255) taagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGcgacc < 1:113167‑M1/56‑3 (MQ=255) taagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtc < 1:5371343‑M1/56‑1 (MQ=255) agttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtctc > 1:305144‑M1/14‑71 (MQ=255) tagcgcttatGGGCGCTCCCACCCTCCATCCTGGCGGCTGTaaa < 1:4178134‑M1/34‑1 (MQ=255) tagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGa < 1:1396569‑M1/60‑1 (MQ=255) tagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGAc < 1:1781951‑M1/61‑1 (MQ=255) gcgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg > 1:1808648‑M1/1‑22 (MQ=255) gcgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg > 1:4181361‑M1/1‑22 (MQ=255) gcgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg > 1:3404524‑M1/1‑22 (MQ=255) gcgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg > 1:4366772‑M1/1‑22 (MQ=255) gcgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg > 1:1636691‑M1/1‑22 (MQ=255) cgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc < 1:4693582‑M1/43‑1 (MQ=255) cTTGCGGGGCTATCCCACCataagcgctatcttaagggttgaaccatctgtagaatgc < 1:1925588‑M1/58‑40 (MQ=255) tatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtct < 1:103346‑M1/38‑1 (MQ=255) tatGGGCGATCCAACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGaa < 1:4029250‑M1/49‑1 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGc < 1:790270‑M1/52‑1 (MQ=255) gggCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtt < 1:5187679‑M1/71‑59 (MQ=255) gggCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtt < 1:2661209‑M1/71‑59 (MQ=255) gggCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtt < 1:2993787‑M1/71‑59 (MQ=255) ggCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtt < 1:4974992‑M1/70‑59 (MQ=255) ggCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtt < 1:3065568‑M1/70‑59 (MQ=255) GCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGcc > 1:2400908‑M1/1‑71 (MQ=255) GCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGcc > 1:642377‑M1/1‑71 (MQ=255) tCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggttcctcgttaagacg < 1:1682805‑M1/71‑65 (MQ=255) tCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacg < 1:4618194‑M1/71‑65 (MQ=255) ccataagcgctaacttaagggtttaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc < 1:3337361‑M1/71‑70 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:3945121‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcg < 1:1690595‑M1/58‑57 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcg < 1:4815433‑M1/58‑57 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcg < 1:186427‑M1/58‑57 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggcgcctcg < 1:3840‑M1/58‑57 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:2946211‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:4375283‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:2060836‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:3650487‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:1480413‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:2928374‑M1/35‑34 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:3451922‑M1/35‑34 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:2780368‑M1/35‑34 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:5325964‑M1/35‑34 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:4309289‑M1/35‑34 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:4310882‑M1/35‑34 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:4797312‑M1/35‑34 (MQ=255) cataagctctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgccg > 1:1574667‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcct > 1:1869318‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcct > 1:602044‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcct > 1:1387348‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcct > 1:4717614‑M1/1‑1 (MQ=255) | AACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGC > W3110S.gb/2018516‑2018653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |