New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2018583	0 (0.000)	34 (0.610)	11/96	NT	100%	coding (579/687 nt)	fliH	flagellar biosynthesis protein
	?	W3110S.gb	= 2521059	NA (NA)					intergenic (+170/+30)	insL/yfeA	predicted transposase/predicted diguanylate cyclase

CCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCG  >  W3110S.gb/2521011‑2521108                                                 |                                                  ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttt                                 <  1:975527/67‑1 (MQ=255) ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttt                                 <  1:5534790/67‑1 (MQ=255) ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttt                                 <  1:4756468/67‑1 (MQ=255) ccGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttt                                 <  1:4388447/67‑1 (MQ=255)  cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttt                                 <  1:3484706/66‑1 (MQ=255)   gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttt                               >  1:3454485/1‑67 (MQ=255)   gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttt                               >  1:5324753/1‑67 (MQ=255)   gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTa                            >  1:3509539/1‑70 (MQ=255)   gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTAc                           >  1:1730814/1‑71 (MQ=255)   gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTAc                           >  1:1418765/1‑71 (MQ=255)           gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGtt                    >  1:5053323/1‑70 (MQ=255)            cATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTaa                  >  1:4276898/1‑71 (MQ=255)            cATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTaa                  >  1:4286507/1‑71 (MQ=255)                 cttaGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGc             >  1:3646410/4‑71 (MQ=255)                   cAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCt            <  1:4021325/70‑1 (MQ=255)                           tCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTa                            >  1:4041797/1‑46 (MQ=255)                           tCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTa                            >  1:4647839/1‑46 (MQ=255)                           tCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTa                            >  1:3534133/1‑46 (MQ=255)                            cAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGc   <  1:851135/70‑1 (MQ=255)                            cAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGc   <  1:1453638/70‑1 (MQ=255)                            cAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCg  >  1:2964286/1‑71 (MQ=255)                                 cTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAAt         <  1:4824110/59‑1 (MQ=255)                                               tATGGGATAATTCCCCGGTTTTTTTACGCCTGTTaa                  >  1:3836716/1‑36 (MQ=255)                                               tATGGGATAATTCCCCGGTTTTTTTACGCCTGTTaa                  >  1:4787235/1‑36 (MQ=255)                                               tATGGGATAATTCCCCGGTTTTTTTACGCCTGTTaa                  >  1:4789856/1‑36 (MQ=255)                                                 |                                                  CCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCG  >  W3110S.gb/2521011‑2521108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.