| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 103 (1.800) | 24/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
ATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA > W3110S.gb/2172239‑2172373 | atatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:3765732/71‑1 (MQ=255)atatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:2211113/71‑1 (MQ=255) ggTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg > 1:252188/1‑71 (MQ=255) gTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc < 1:5510544/71‑1 (MQ=255) tCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCa < 1:4625999/71‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg < 1:1043777/67‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg < 1:4445258/67‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg < 1:5592405/67‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg < 1:103076/67‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg < 1:858047/67‑1 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt > 1:4889253/1‑71 (MQ=255) tgCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:1227296/44‑1 (MQ=255) ggCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc < 1:4654067/71‑1 (MQ=255) gCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc < 1:1990977/70‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:1722617/41‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:1735215/41‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:901448/41‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:3756429/41‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:656018/41‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:3598896/41‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:2289590/41‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:4908987/41‑1 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:2736511/1‑70 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:3850454/1‑70 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 1:666565/1‑70 (MQ=255) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:60306/70‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:3182442/52‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:3375702/52‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:1566711/52‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:1274872/52‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:1546852/52‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:2000935/52‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:1771322/52‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:4644826/52‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:4027240/52‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:687729/52‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:3055823/58‑1 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:2278296/58‑1 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:919520/70‑1 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:4437354/70‑1 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:3554067/70‑1 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGTAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:1768198/70‑1 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:1138444/70‑1 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:1275269/70‑1 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:3411486/70‑1 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:3929341/70‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:467315/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:4682520/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:4403587/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:4629356/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:1179500/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:5308391/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:2512236/69‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag < 1:2025403/69‑1 (MQ=255) gaATAACGGTCTGATCTTACCCAGCAATAGTGGacac < 1:2228317/37‑1 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:361082/1‑71 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:4622741/1‑71 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc > 1:4957903/1‑71 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTAAGAGGTGAc > 1:4553221/1‑71 (MQ=255) aTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:2024063/42‑1 (MQ=255) aCGGGCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca < 1:35556/55‑1 (MQ=16) cGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 1:4323561/71‑1 (MQ=34) | ATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA > W3110S.gb/2172239‑2172373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |