| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 103 (1.800) | 24/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 232 total aligned reads displayed.
AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > W3110S.gb/3920211‑3920346 | ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:3243527‑M2/1‑69 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:413793‑M2/1‑69 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:4197791‑M2/1‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac > 1:4611385‑M2/66‑69 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:2983446‑M2/71‑6 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt > 1:1244288‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt > 1:4700740‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:869220‑M2/62‑70 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:4877987‑M2/1‑65 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:2132231‑M2/1‑65 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:2230556‑M2/1‑65 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:480588‑M2/60‑68 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:1440905‑M2/71‑10 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:439029‑M2/71‑10 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:1258834‑M2/71‑10 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:5590127‑M2/71‑10 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:549734‑M2/1‑57 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:2733164‑M2/1‑57 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:2008717‑M2/1‑57 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:668190‑M2/52‑71 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:4307942‑M2/71‑17 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:5377867‑M2/24‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTATAGCCATCGTCAgg < 1:5149546‑M2/25‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAgg < 1:589190‑M2/25‑1 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:1514252‑M2/28‑1 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:1449148‑M2/28‑1 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:4523412‑M2/41‑71 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:4250909‑M2/41‑71 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:117027‑M2/41‑71 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:4046067‑M2/41‑71 (MQ=255) aTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:445469‑M2/1‑43 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttagc < 1:2615240‑M2/51‑11 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:2830801‑M2/51‑11 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:710562‑M2/51‑11 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat < 1:2199032‑M2/55‑18 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat < 1:211233‑M2/55‑18 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat < 1:2515577‑M2/55‑18 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:5322616‑M2/38‑1 (MQ=255) aTCGTTCTGTATAGCAGAGAAGTGTACGAACACtga > 1:1081491‑M2/1‑33 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagaatagtggacacgcggctaa < 1:5416910‑M2/66‑34 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:5363034‑M2/1‑33 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:1126574‑M2/1‑33 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:3416131‑M2/1‑32 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:4331928‑M2/28‑50 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagttgacacgcggc > 1:3889472‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:2773947‑M2/70‑41 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc > 1:46359‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc > 1:4106656‑M2/1‑30 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTg > 1:5112086‑M2/25‑71 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTg > 1:2559307‑M2/25‑71 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta < 1:2446360‑M2/61‑34 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta < 1:2746730‑M2/61‑34 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta < 1:3996743‑M2/61‑34 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta < 1:3940360‑M2/61‑34 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta < 1:3835557‑M2/61‑34 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta < 1:4410975‑M2/61‑34 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta < 1:5252241‑M2/61‑34 (MQ=255) gATATCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:4929821‑M2/1‑24 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:3495351‑M2/1‑24 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac < 1:686296‑M2/50‑27 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:3277362‑M2/21‑71 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:2319163‑M2/21‑71 (MQ=255) tattacgtgggtagtatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:3375028‑M2/29‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:3806128‑M2/29‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:4497307‑M2/29‑1 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag < 1:4400693‑M2/71‑51 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:3001277‑M2/17‑37 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg > 1:1690974‑M2/17‑40 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc > 1:5157727‑M2/17‑53 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:4162773‑M2/17‑64 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:4923865‑M2/17‑64 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:2241317‑M2/17‑64 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:3629418‑M2/17‑70 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:2417055‑M2/1‑20 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag > 1:805964‑M2/1‑20 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag > 1:3048525‑M2/1‑20 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactcacagt < 1:4565648‑M2/70‑52 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTc > 1:1831735‑M2/15‑63 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg > 1:1028176‑M2/15‑70 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagttgacacgcggctaagtgagtaaactctcagtcag > 1:4997558‑M2/1‑17 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1957891‑M2/1‑17 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCTAAGCCTTTGTCAGCGTTGAACCAttt < 1:3507992‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:4898211‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:1615594‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:1707518‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtt > 1:2633265‑M2/8‑70 (MQ=255) taggatcACACATATTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt > 1:5215912‑M2/8‑71 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:3131598‑M2/1‑10 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:1208211‑M2/1‑10 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:3313450‑M2/1‑10 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:1361053‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:1284108‑M2/71‑63 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc > 1:3107233‑M2/1‑7 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:3558338‑M2/3‑71 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:3779401‑M2/46‑1 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:791034‑M2/46‑1 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTc > 1:1327608‑M2/1‑49 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:2430127‑M2/1‑69 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:4314586‑M2/1‑69 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:3227552‑M2/1‑69 (MQ=255) | AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > W3110S.gb/3920211‑3920346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |