| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 91 (1.590) | 21/98 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCT > W3110S.gb/2173497‑2173624 | cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAg > 1:5306573/1‑70 (MQ=31)cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:3456701/71‑1 (MQ=32)cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:278136/71‑1 (MQ=32)cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt > 1:2444584/1‑71 (MQ=32)cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:1778965/71‑1 (MQ=32)cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt < 1:4415257/71‑1 (MQ=32) ccGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATccc > 1:2144438/1‑71 (MQ=39) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGTGTAGGATCAGTCATCCCTTCGTGGATc < 1:3683114/70‑1 (MQ=255) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATc < 1:5022251/70‑1 (MQ=255) tGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATc < 1:4187112/70‑1 (MQ=255) gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:676662/70‑1 (MQ=255) gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:2391669/70‑1 (MQ=255) gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:4169425/70‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:2853798/71‑1 (MQ=255) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgccgcc > 1:76189/1‑71 (MQ=255) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCt > 1:786573/1‑71 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:2854256/1‑57 (MQ=255) tatTACGTGGGTAGGTTCAGTCATCCCTTCGTGGAt < 1:2725017/36‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt < 1:2715177/36‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt < 1:1301835/36‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt < 1:3780620/36‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc < 1:1304870/57‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc < 1:161772/57‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc < 1:4746759/57‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc < 1:1653832/57‑1 (MQ=255) atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:3508586/41‑1 (MQ=255) atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:4183665/41‑1 (MQ=255) atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:5431200/41‑1 (MQ=255) atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:324799/41‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa > 1:35660/1‑36 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa > 1:585582/1‑36 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa > 1:5235830/1‑36 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:2331164/40‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg > 1:4676651/1‑41 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:3413845/1‑43 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:5344603/1‑43 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:4322883/1‑43 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:4054282/1‑43 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:1172398/1‑43 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:3392742/1‑43 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:3001715/1‑43 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:2326982/1‑43 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:1851038/1‑43 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTAtt > 1:4625415/1‑59 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc > 1:4220926/1‑71 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc > 1:4090477/1‑71 (MQ=255) aCGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgc > 1:2695480/1‑71 (MQ=255) gTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgcgc < 1:1238221/71‑1 (MQ=255) tGGTTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCt < 1:1418058/71‑1 (MQ=255) tGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCt < 1:2530074/71‑1 (MQ=255) tGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCt < 1:1671077/71‑1 (MQ=255) | CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCT > W3110S.gb/2173497‑2173624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |