| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 91 (1.590) | 21/98 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 260 total aligned reads displayed.
TGGTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > W3110S.gb/3920206‑3920346 | ctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:942802‑M2/69‑71 (MQ=255) ctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:4136843‑M2/69‑71 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:761115‑M2/1‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac > 1:4611385‑M2/66‑69 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:1278584‑M2/62‑64 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:3452203‑M2/1‑1 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt > 1:1244288‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt > 1:2374620‑M2/62‑68 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:869220‑M2/62‑70 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:4149045‑M2/1‑65 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:4877987‑M2/1‑65 (MQ=255) tttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:1284138‑M2/1‑63 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:480588‑M2/60‑68 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:5590127‑M2/71‑10 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:439029‑M2/71‑10 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:1440905‑M2/71‑10 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:1258834‑M2/71‑10 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:2979448‑M2/54‑56 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:2451031‑M2/54‑56 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:617551‑M2/1‑1 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1012608‑M2/1‑1 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:4691484‑M2/1‑1 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:2008717‑M2/1‑57 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:2626399‑M2/1‑57 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:2740675‑M2/52‑54 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:350947‑M2/52‑71 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:5185671‑M2/52‑71 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:668190‑M2/52‑71 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctttcccagcaa < 1:5218452‑M2/71‑17 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagca < 1:3825757‑M2/70‑16 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtatgatcACACATCTTTAGAGCCATCGTCAgg < 1:2237672‑M2/25‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTATAGCCATCGTCAgg < 1:5143122‑M2/25‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAgg < 1:5406497‑M2/25‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAgg < 1:1095109‑M2/25‑1 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:1449148‑M2/28‑1 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:3563247‑M2/28‑1 (MQ=255) gagaTTTGTAACCATCGCTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:336546‑M2/71‑26 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:4523412‑M2/41‑71 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:4250909‑M2/41‑71 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:4046067‑M2/41‑71 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga > 1:15626‑M2/41‑70 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:3866036‑M2/21‑1 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:2176806‑M2/51‑11 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:321634‑M2/50‑10 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:5277183‑M2/37‑71 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:369850/35‑1 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:587924/35‑1 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:2833689/35‑1 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:1758733/1‑37 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat < 1:211233‑M2/55‑18 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat < 1:2515577‑M2/55‑18 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat < 1:3042486‑M2/55‑18 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtga > 1:4555393‑M2/1‑33 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:3416131‑M2/1‑32 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:1044598‑M2/28‑50 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:2207556‑M2/70‑41 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc > 1:46359‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc > 1:4106656‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc > 1:4304690‑M2/1‑30 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTg > 1:2559307‑M2/25‑71 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta < 1:3996743‑M2/61‑34 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta < 1:2746730‑M2/61‑34 (MQ=255) tCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta < 1:3940360‑M2/61‑34 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac < 1:686296‑M2/50‑27 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:1823241‑M2/21‑71 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:3845226‑M2/29‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:112765‑M2/29‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:4941126‑M2/29‑1 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag < 1:4332112‑M2/71‑51 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag < 1:4400693‑M2/71‑51 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:3001277‑M2/17‑37 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg > 1:3273009‑M2/17‑40 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg > 1:1690974‑M2/17‑40 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg > 1:5340400‑M2/17‑45 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc > 1:5157727‑M2/17‑53 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:4923865‑M2/17‑64 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:5073849‑M2/17‑71 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:2417055‑M2/1‑20 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:448454‑M2/15‑49 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTc > 1:4415516‑M2/15‑63 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1957891‑M2/1‑17 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:1615594‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:5479614‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:2638091‑M2/64‑1 (MQ=255) taggatcACACATCTTTAGAGCCAACGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:837013‑M2/64‑1 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:2781233‑M2/1‑10 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:53731‑M2/1‑10 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:4177246‑M2/1‑10 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:1361053‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:1192339‑M2/71‑63 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc > 1:3107233‑M2/1‑7 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:791034‑M2/46‑1 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:3779401‑M2/46‑1 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:3507169‑M2/1‑69 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:3294053‑M2/1‑69 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:2301105‑M2/1‑69 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:491201‑M2/1‑69 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:2430127‑M2/1‑69 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:3227552‑M2/1‑69 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:4314586‑M2/1‑69 (MQ=255) | TGGTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > W3110S.gb/3920206‑3920346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |