| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3750592 | 0 (0.000) | 131 (2.440) | 32/92 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
Only 100 of 150 total aligned reads displayed.
TCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATC > W3110S.gb/3750522‑3750660 | tCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA < 1:3549087‑M1/71‑1 (MQ=255) tgAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaag > 1:267041‑M1/1‑65 (MQ=255) tgAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaag > 1:3362852‑M1/1‑65 (MQ=255) tgAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaag > 1:429240‑M1/1‑65 (MQ=255) tatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaa > 1:4931904‑M1/1‑61 (MQ=255) tatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaa > 1:1399283‑M1/1‑61 (MQ=255) ttACATCTGCTTTACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat < 1:94702‑M1/70‑12 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:1688474‑M1/71‑13 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat > 1:5182135‑M1/1‑59 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat > 1:5102023‑M1/1‑59 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat < 1:5440431‑M1/70‑12 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat < 1:406900‑M1/70‑12 (MQ=255) ttACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaat < 1:3688089‑M1/70‑12 (MQ=255) cATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:1005960‑M1/1‑56 (MQ=255) cATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:429359‑M1/1‑56 (MQ=255) cATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaac > 1:4870234‑M1/1‑56 (MQ=255) tGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:2402535‑M1/1‑52 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgaga < 1:3068452‑M1/69‑20 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgaga < 1:2459446‑M1/69‑20 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga < 1:5083494‑M1/67‑18 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:2796849‑M1/1‑50 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:5526351‑M1/1‑50 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:2619410‑M1/1‑50 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:3167291‑M1/1‑50 (MQ=255) cTATACCGATTAATTCGCCAGATATATATGCAAGCACCATAATTTACTAAaacaagtaaataaacga > 1:2234162‑M1/1‑50 (MQ=255) ataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 1:4135154‑M1/1‑48 (MQ=255) ataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 1:3973274‑M1/1‑48 (MQ=255) ataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 1:5531469‑M1/1‑48 (MQ=255) ataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaac > 1:1846074‑M1/1‑48 (MQ=255) taCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagt < 1:240365‑M1/54‑8 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:5367797‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:4217072‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:2960109‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:4337582‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:552189‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:1255122‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:1236329‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:176106‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:5304885‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacc > 1:558796‑M1/1‑45 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:5586135‑M1/57‑13 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:3352619‑M1/57‑13 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:1183202‑M1/57‑13 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaata < 1:1171290‑M1/57‑13 (MQ=255) aTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgca > 1:2230978‑M1/1‑38 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:4312822‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:5394537‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:3796634‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:3665140‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:3589933‑M1/71‑35 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:2924654‑M1/71‑35 (MQ=255) cGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa < 1:2423316‑M1/70‑36 (MQ=255) cGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaa < 1:2304694‑M1/70‑36 (MQ=255) gCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaagg < 1:2209878‑M1/71‑38 (MQ=255) ccAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaagg > 1:1885128‑M1/1‑33 (MQ=255) ccAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaagg > 1:5481829‑M1/1‑33 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgac < 1:4909968‑M1/54‑26 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgac < 1:2596161‑M1/54‑26 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgac < 1:131897‑M1/54‑26 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgac < 1:4150401‑M1/54‑26 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgac < 1:5134972‑M1/54‑26 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagta < 1:5311064‑M1/37‑9 (MQ=255) atatatGCAAGCGCCATCATTTACTAAaacaagtaaa > 1:4450146‑M1/1‑27 (MQ=255) atatatGCAAGCAGCATCATTTACTAAaacaagtaaa > 1:2676013‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaa > 1:5203110‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaa > 1:3147601‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaa > 1:1475842‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaa > 1:5212611‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaa > 1:3979235‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaa > 1:3478754‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaa > 1:1667678‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaa > 1:5067988‑M1/1‑27 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt < 1:666963‑M1/70‑45 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagat < 1:2874118‑M1/71‑50 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagat < 1:3730084‑M1/71‑50 (MQ=255) cAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagata > 1:739184‑M1/1‑20 (MQ=255) cAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagat > 1:1336959‑M1/1‑20 (MQ=255) aGCTCCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaagg > 1:5312245‑M1/1‑18 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag > 1:2322026‑M1/1‑18 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag > 1:4240442‑M1/1‑18 (MQ=255) aGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag > 1:1643888‑M1/1‑18 (MQ=255) gCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag > 1:952155‑M1/1‑17 (MQ=255) gCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag > 1:2652661‑M1/1‑17 (MQ=255) aCCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagca > 1:1046570‑M1/1‑15 (MQ=255) aCCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagca < 1:2110037‑M1/70‑56 (MQ=255) catcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaa > 1:5243066‑M1/1‑13 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:5425980‑M1/52‑41 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:32832‑M1/52‑41 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:2027592‑M1/52‑41 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:1706779‑M1/52‑41 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaaca > 1:642626‑M1/1‑11 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaag > 1:4506366‑M1/1‑11 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaag > 1:409073‑M1/1‑11 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaag > 1:1600593‑M1/1‑11 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaa < 1:735861‑M1/51‑41 (MQ=255) tttACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:2720245‑M1/1‑8 (MQ=255) ttACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaag < 1:556422‑M1/54‑48 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatca < 1:1977605‑M1/69‑69 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatca < 1:280732‑M1/69‑69 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaag > 1:4795040‑M1/1‑1 (MQ=255) | TCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATC > W3110S.gb/3750522‑3750660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |