| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3750592 | 0 (0.000) | 131 (2.440) | 32/92 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
Only 100 of 149 total aligned reads displayed.
CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCA > W3110S.gb/3751727‑3751859 | tgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAg > 1:429240‑M2/66‑71 (MQ=255)tgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAg > 1:1217078‑M2/66‑71 (MQ=255)tgaatattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAg > 1:267041‑M2/66‑71 (MQ=255) tattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaa > 1:4931904‑M2/62‑71 (MQ=255) ttacatctgctttaccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat < 1:94702‑M2/11‑1 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaata < 1:1688474‑M2/12‑1 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat < 1:406900‑M2/11‑1 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat < 1:3688089‑M2/11‑1 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat < 1:5440431‑M2/11‑1 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat > 1:5102023‑M2/60‑70 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat > 1:5182135‑M2/60‑70 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat > 1:2642066‑M2/60‑70 (MQ=255) catctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAAc > 1:4870234‑M2/57‑71 (MQ=255) catctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAAc > 1:429359‑M2/57‑71 (MQ=255) catctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAAc > 1:1005960‑M2/57‑71 (MQ=255) tgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:3358349‑M2/53‑69 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 1:2459446‑M2/19‑1 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 1:3068452‑M2/19‑1 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:2619410‑M2/51‑67 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:3167291‑M2/51‑67 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:5526351‑M2/51‑67 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga < 1:1286642‑M2/17‑1 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga < 1:5083494‑M2/17‑1 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccataatttactaaAACAAGTAAATAAACga > 1:2234162‑M2/51‑67 (MQ=255) ataccgattaattcgccagatatatatgcaagcaccatcatttactaaAAc > 1:4135154‑M2/49‑51 (MQ=255) ataccgattaattcgccagatatatatgcaagcaccatcatttactaaAAc > 1:5531469‑M2/49‑51 (MQ=255) ataccgattaattcgccagatatatatgcaagcaccatcatttactaaAAc > 1:1662117‑M2/49‑51 (MQ=255) ataccgattaattcgccagatatatatgcaagcaccatcatttactaaAAc > 1:2413034‑M2/49‑51 (MQ=255) ataccgattaattcgccagatatatatgcaagcaccatcatttactaaAAc > 1:3973274‑M2/49‑51 (MQ=255) taccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGt < 1:240365‑M2/7‑1 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaata < 1:3352619‑M2/12‑1 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaata < 1:5586135‑M2/12‑1 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaata < 1:1183202‑M2/12‑1 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:4337582‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:3537532‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:4217072‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:5304885‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:552189‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:3134815‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:5352674‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:5367797‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:2755969‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:558796‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:1255122‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:176106‑M2/46‑71 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAc > 1:1350930‑M2/46‑70 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATCAcc > 1:1690765‑M2/46‑71 (MQ=255) cgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGt < 1:108980‑M2/7‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:2826412‑M2/34‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:5394537‑M2/34‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:3665140‑M2/34‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:3796634‑M2/34‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:4312822‑M2/34‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:2924654‑M2/34‑1 (MQ=255) gccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAgg < 1:2209878‑M2/37‑1 (MQ=255) ccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAgg > 1:1885128‑M2/34‑70 (MQ=255) ccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAgg > 1:5481829‑M2/34‑70 (MQ=255) atatatatgcaagcaccatcatttactaaAACAAGta < 1:5311064‑M2/8‑1 (MQ=255) atatatatgcaagcaccatcatttactaaAACAAGTAGATAAACGAGAGATGAc < 1:2278512‑M2/25‑1 (MQ=255) atatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAc < 1:2223774‑M2/25‑1 (MQ=255) atatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAc < 1:4150401‑M2/25‑1 (MQ=255) atatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAc < 1:1934594‑M2/25‑1 (MQ=255) atatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAc < 1:5134972‑M2/25‑1 (MQ=255) atatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAc < 1:4909968‑M2/25‑1 (MQ=255) tatatatgcaagcaccatcatttactaaAACAAGta < 1:3185503‑M2/8‑1 (MQ=255) atatatgcaagcgccatcatttactaaAACAAGtaaa > 1:4450146‑M2/28‑37 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGtaaa > 1:5212611‑M2/28‑37 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGtaaa > 1:5203110‑M2/28‑37 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGtaaa > 1:3478754‑M2/28‑37 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGtaaa > 1:1475842‑M2/28‑37 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGtaaa > 1:5067988‑M2/28‑37 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGtaaa > 1:3979235‑M2/28‑37 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGaaaa > 1:2326953‑M2/28‑37 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:3597479‑M2/28‑53 (MQ=255) tatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAtt < 1:666963‑M2/44‑1 (MQ=255) tgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGat < 1:3730084‑M2/49‑1 (MQ=255) tgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGat < 1:1840313‑M2/49‑1 (MQ=255) tgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGa < 1:1549614‑M2/48‑1 (MQ=255) caagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGata > 1:739184‑M2/21‑70 (MQ=255) caagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGat > 1:1336959‑M2/21‑69 (MQ=255) agcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAg > 1:1643888‑M2/19‑71 (MQ=255) agcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAg > 1:2322026‑M2/19‑71 (MQ=255) agcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAg > 1:4240442‑M2/19‑71 (MQ=255) gcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAg > 1:952155‑M2/18‑70 (MQ=255) accatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGca > 1:1046570‑M2/16‑70 (MQ=255) catcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaa > 1:5243066‑M2/14‑70 (MQ=255) atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaa < 1:5425980‑M2/40‑1 (MQ=255) atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaa < 1:2673863‑M2/40‑1 (MQ=255) atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaa < 1:246913‑M2/40‑1 (MQ=255) atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaa < 1:2027592‑M2/40‑1 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaa < 1:735861‑M2/40‑1 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAg > 1:4506366‑M2/12‑58 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAg > 1:409073‑M2/12‑58 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaaca > 1:642626‑M2/12‑70 (MQ=255) tttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa > 1:2720245‑M2/9‑69 (MQ=255) ttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAg < 1:556422‑M2/47‑1 (MQ=255) tactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAg < 1:2936630‑M2/64‑1 (MQ=255) tactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAg < 1:2073830‑M2/64‑1 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAg > 1:4795040‑M2/2‑37 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATca < 1:280732‑M2/68‑1 (MQ=255) | CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCA > W3110S.gb/3751727‑3751859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |