New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 315707	NA (NA)	21 (0.920)	14/98	NT	100%	coding (654/687 nt)	ykgA	predicted DNA‑binding transcriptional regulator
	?	W3110S.gb	576911 =	0 (0.000)					coding (76/498 nt)	ybcS	predicted lysozyme

CCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAG  >  W3110S.gb/315638‑315774                                                                      |                                                                    ccTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAt                                                                    <  1:1172680/71‑1 (MQ=31)  cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa                                                                   <  1:2216310/71‑1 (MQ=32)  cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa                                                                   <  1:1516932/71‑1 (MQ=32)  cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa                                                                   <  1:1519304/71‑1 (MQ=32)  cTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa                                                                   <  1:532383/71‑1 (MQ=32)       tCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAg                                                                <  1:401106/69‑1 (MQ=39)         cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCt                                                            >  1:1992032/1‑71 (MQ=255)                 tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATaaa                                                                 <  1:281177/58‑1 (MQ=38)                      aaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATa                                                                   <  1:386509/51‑1 (MQ=33)                                 tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg                                     >  1:521194/1‑70 (MQ=255)                                       aGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCtttt                                       >  1:450078/1‑62 (MQ=255)                                       aGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGt                                >  1:1805996/1‑69 (MQ=255)                                              tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCg                                                     <  1:1563858/41‑1 (MQ=255)                                              tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCata                         <  1:728047/69‑1 (MQ=255)                                                tCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca                     <  1:1392744/71‑1 (MQ=255)                                                tCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca                     <  1:1116583/71‑1 (MQ=255)                                                  cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCatat                        >  1:1952941/1‑66 (MQ=255)                                                  cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca                   <  1:2202477/71‑1 (MQ=255)                                                    tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCa                                              <  1:289972/42‑1 (MQ=255)                                                      ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcac                    >  1:2102396/1‑66 (MQ=255)                                                      ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAcc               >  1:1918683/1‑71 (MQ=255)                                                      ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAc                >  1:906087/1‑70 (MQ=255)                                                        aCGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCa                                              >  1:206319/1‑38 (MQ=255)                                                        aCGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCa                                              >  1:171993/1‑38 (MQ=255)                                                        aCGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcac                    >  1:1583303/1‑64 (MQ=255)                                                         cGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTa            >  1:327429/1‑71 (MQ=255)                                                          gTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGGATGTCAGCATATTca                     <  1:61051/61‑1 (MQ=255)                                                                   aTCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAg  <  1:4052/71‑1 (MQ=255)                                                                    tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa                           >  1:1382844/1‑45 (MQ=255)                                                                    tCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa                           <  1:128037/45‑1 (MQ=255)                                                                      aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa                           <  1:2152425/43‑1 (MQ=255)                                                                      aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCa                           <  1:796431/43‑1 (MQ=255)                                                                      aTAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTAc           <  1:54791/59‑1 (MQ=255)                                                                      |                                                                    CCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCGTACCAGCAAAAG  >  W3110S.gb/315638‑315774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.