| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 32 (1.440) | 18/96 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
GTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTG > W3110S.gb/2173501‑2173633 | gTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATc < 1:611499/71‑1 (MQ=38) ttGAAAACAAGCACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt > 1:732563/1‑70 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt < 1:1542384/71‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:2092925/71‑1 (MQ=255) cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGCATCAGTCATCCCTTCGTGGATCATTTTg < 1:125163/63‑1 (MQ=255) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCAt < 1:2196161/43‑1 (MQ=40) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCt > 1:2206863/1‑46 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCAt > 1:254577/1‑35 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:1595764/54‑1 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTc < 1:70818/71‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTg < 1:300717/70‑1 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtttt < 1:895583/70‑1 (MQ=255) atatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGtttttt < 1:2026620/71‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt < 1:643063/39‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:2053358/43‑1 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATc > 1:2032686/1‑35 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGAc > 1:1265603/1‑43 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGttt > 1:544410/1‑65 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc > 1:940893/1‑71 (MQ=255) aCGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgc > 1:1595330/1‑71 (MQ=255) aCGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCACTATTCTGTTTTTTGgcg < 1:1622338/70‑1 (MQ=255) gggTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:396258/1‑36 (MQ=255) gggTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:404692/1‑36 (MQ=255) gggTAGGATCAGTCATCCCTTCGTGGATCATTTTGa > 1:1885450/1‑36 (MQ=255) tCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgcgc > 1:1911477/1‑61 (MQ=255) cAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTg > 1:1724138/1‑70 (MQ=255) | GTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTG > W3110S.gb/2173501‑2173633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |