| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 32 (1.440) | 18/96 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 110 total aligned reads displayed.
GAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920210‑3920348 | gAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:1973353/1‑71 (MQ=255) tcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:2216942‑M2/68‑68 (MQ=255) aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTAGGAaca > 1:852540/1‑70 (MQ=255) aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:490528‑M2/71‑1 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac > 1:233719‑M2/67‑70 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:566147‑M2/1‑70 (MQ=255) ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:1903052/66‑1 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt > 1:2210016‑M2/66‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt > 1:2207598‑M2/66‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt > 1:917959‑M2/66‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:1120244‑M2/3‑1 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca < 1:1223800‑M2/3‑1 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1308947‑M2/1‑1 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcac > 1:117261‑M2/62‑63 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:2095389‑M2/9‑3 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:1027107‑M2/9‑3 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGATAAGTGTACGAACACtgatct > 1:503653‑M2/1‑65 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:658106/61‑1 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:1267594/61‑1 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:1879228‑M2/71‑10 (MQ=255) atCTGACCTTCGTCCAGAGATTAGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:1693097/2‑61 (MQ=255) tGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:568957‑M2/1‑59 (MQ=255) aatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1031688‑M2/1‑1 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:1220823‑M2/10‑1 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCttt < 1:65577‑M2/10‑1 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccca > 1:232938‑M2/1‑57 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:1454083‑M2/1‑55 (MQ=255) gaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:580719‑M2/9‑3 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:1852533‑M2/69‑17 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1227559‑M2/21‑1 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:701552‑M2/21‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:1984506‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:1688861‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:269244‑M2/1‑52 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:1673722‑M2/1‑50 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcac < 1:91115‑M2/2‑1 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:1753785‑M2/71‑24 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTAAGAACACtgatcttacccagcaatagtgga < 1:1838021‑M2/71‑24 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:699183‑M2/55‑10 (MQ=255) gaTTTGTAACCATCGTTCTGGATATCAGAGAAGTGTACGAACACttatcttacccagcaatagtggacacg < 1:964152‑M2/71‑28 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:326434‑M2/54‑11 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtatgatcACACATCTTTAGAGCCATCGt < 1:1183966‑M2/21‑1 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1903095‑M2/21‑1 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACATc < 1:1068224‑M2/7‑1 (MQ=255) aTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:1945457‑M2/1‑43 (MQ=255) aTTTGTAAACATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:1827308/1‑42 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat < 1:727239‑M2/31‑1 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:179743‑M2/60‑20 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:1289327‑M2/63‑24 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:743920‑M2/56‑17 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:1516764‑M2/56‑17 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:240464‑M2/37‑42 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:1388440‑M2/37‑62 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:1913317‑M2/36‑71 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:2015007‑M2/1‑38 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:1668123‑M2/1‑35 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTag > 1:1222061‑M2/32‑43 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:1176701‑M2/28‑1 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt < 1:48791‑M2/69‑37 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata < 1:246626‑M2/51‑19 (MQ=255) cctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:669803‑M2/24‑1 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:1701068‑M2/64‑35 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:1606216‑M2/1‑29 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:562849‑M2/1‑29 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg > 1:1125582‑M2/23‑46 (MQ=255) tGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:1447883‑M2/1‑26 (MQ=255) ggATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactc < 1:991373‑M2/71‑47 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:1188896‑M2/21‑46 (MQ=255) aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:448662‑M2/1‑23 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1212342‑M2/21‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaagc < 1:1378682‑M2/42‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCg > 1:914883‑M2/19‑71 (MQ=255) tattacgtgggtaggatcAAACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCg > 1:551040‑M2/19‑71 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg < 1:957875‑M2/38‑1 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:944299‑M2/1‑20 (MQ=255) gCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcgg < 1:140907‑M2/50‑31 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt > 1:2021588‑M2/16‑60 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:856557‑M2/16‑70 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc > 1:1184964‑M2/1‑19 (MQ=255) agaAGTGTACGCACACtgatcttacccagcaatagtggacacgcggcta < 1:111495‑M2/49‑34 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAcc < 1:1322622‑M2/60‑1 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAcc < 1:2079290‑M2/60‑1 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag > 1:1116901‑M2/1‑15 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt > 1:1087959‑M2/10‑71 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggt < 1:2002975‑M2/70‑59 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:1760020‑M2/71‑63 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa > 1:1131084‑M2/6‑39 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa > 1:1532715‑M2/6‑39 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:275960‑M2/67‑1 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc < 1:950447‑M2/70‑64 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag < 1:166219‑M2/63‑57 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag < 1:1545746‑M2/63‑57 (MQ=255) atcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc < 1:1779633‑M2/37‑1 (MQ=255) atcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc > 1:440988‑M2/4‑70 (MQ=255) tcACACATCTTTAGAGCCATCGTAAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:686865‑M2/3‑71 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:1061217‑M2/1‑6 (MQ=255) aaCACtgatcttacccagcaatagtggacacgcggctaagtg > 1:2157508‑M2/1‑5 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCTAAGCCTTTg < 1:1395796‑M2/47‑1 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTg < 1:671336‑M2/47‑1 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:670705‑M2/1‑71 (MQ=255) | GAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920210‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |