| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 15385 = | 35 (0.580) | 10 (0.170) | 8/96 | NT | 23.7% | intergenic (+87/+60) | dnaJ/mokC | chaperone Hsp40, co‑chaperone with DnaK/regulatory protein for HokC, overlaps CDS of hokC |
| ? | minE | = 1570889 | 30 (0.510) | intergenic (+26/+210) | nupC/alaX | nucleoside (except guanosine) transporter/tRNA‑Ala | |||||
GAAGAGAGCACGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/15454‑15385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACACTCACC < minE/1570889‑1570821 GAAGAGAGCACGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAGT > 1:3025373/1‑70GAAGAGAGCACGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAGT > 1:2821423/1‑70 atCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATTACTCCCCG > 1:1108840/3‑70 AATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTA < 1:2336033/71‑1 TCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTA > 1:3364167/1‑60 AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTA > 1:903766/1‑70 AGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTA > 1:1726692/1‑70 GGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCT < 1:961605/67‑1 GTAATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTACAGCA < 1:1164800/71‑1 ATACCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCA < 1:1449256/71‑1 CCACAACCCTTAAGTTAGCGCTTATGGGAATTATCCCCGGCTTTTTTATGTATG > 1:2678584/1‑54 CCACAACCCTTAAGTTAGCGCTTATGGGAATTATC > 1:735675/1‑35 CTTATGGGAATTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGC < 1:1957464/71‑1 aTTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACACTCACC < 1:1863888/70‑1 TTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACACTCAC > 1:2264853/1‑69 TTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACACTCAC > 1:637572/1‑69 TTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACA > 1:2464180/1‑64 TTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACA > 1:449428/1‑64 TTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGA > 1:2597598/1‑57 TTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGA > 1:340180/1‑51 TTATCCCAGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGA > 1:4107200/1‑51 TTATCACCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGA > 1:3822189/1‑47 GAAGAGAGCACGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/15454‑15385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTATCCCCGGCTTTTTTATGTATGGTCTTACAGCACCAGTGCTGCGATTGACGCAGACAGCACACTCACC < minE/1570889‑1570821 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |