| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 18241 | 73 (1.220) | 17 (0.280) | 14/98 | NT | 23.1% | intergenic (+80/+252) | nhaR/rpsT | DNA‑binding transcriptional activator/30S ribosomal subunit protein S20 |
| ? | minE | 1502766 = | 40 (0.670) | intergenic (‑139/‑781) | lrhA/yfbQ | DNA‑binding transcriptional repressor/predicted aminotransferase | |||||
TTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/18186‑18241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > minE/1502766‑1502833 cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCAC < 1:3735566/70‑1 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAT > 1:951699/1‑71 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAA > 1:2071547/1‑56 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTA > 1:1046246/1‑71 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGA > 1:2901811/1‑54 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATG < 1:3998203/71‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCC > 1:3263855/1‑71 TCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACA < 1:2011908/50‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTA < 1:1318391/60‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTA > 1:3113359/1‑59 ACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGT > 1:4077249/1‑48 ACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCAC < 1:4083415/43‑1 AAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTAT > 1:2289922/1‑53 ATCAGTAATTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAT < 1:2393950/67‑1 AAGTTGGCAGCAAAACCAAAAAAGCGACTCACATTGTTCCGTTAT < 1:826705/45‑1 GCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTT < 1:3279455/70‑1 CATCACCAAAAAAGCGACTCACATTGTTCCGTTAT < 1:3764484/35‑1 TCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAG < 1:3370836/54‑1 TCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAG < 1:277882/54‑1 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > 1:3440966/1‑71 ACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTG < 1:3947137/39‑1 CAAAAAAGCGACTCACATTGTTCCGTTATAATGACTGAAGT > 1:3194664/1‑41 TTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/18186‑18241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > minE/1502766‑1502833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |