Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2539454	2539499	46	69 [0]	[0] 13	[rfaJ]	[rfaJ]

TTTAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATAAA  >  minE/2539392‑2539453                                                              | tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGTAAACTATaaa  <  1:1588297/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:277393/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:511785/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:509822/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:49520/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:423916/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:346635/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:342964/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:318882/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:543962/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:263704/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:237876/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:222578/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1891067/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1885015/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1860793/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1028111/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1837839/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:545368/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:596978/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:614010/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:624362/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:627657/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:630606/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:664468/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:721593/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:734914/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:770606/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:78868/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:812854/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:820752/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:918864/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:971250/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1505470/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1126523/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1187632/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1332209/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1332582/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1334076/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1334660/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1336450/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1362021/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1418693/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1434913/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1813099/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1510346/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1528371/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1570649/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1611105/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1804584/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1789873/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1778672/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1770404/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1723941/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1720773/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:164038/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1621037/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1614448/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1602549/62‑1 (MQ=255) tttAGCAACTATCTTTTTTATTTTATTCAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1204627/62‑1 (MQ=255)  ttAGCAACTATCTTTTTTATTTTATTGAATAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:132583/61‑1 (MQ=255)  ttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1639696/61‑1 (MQ=255)  ttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:641006/61‑1 (MQ=255)  ttAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1296956/61‑1 (MQ=255)             cTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1693685/50‑1 (MQ=255)              ttttttATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:331281/49‑1 (MQ=255)               tttttATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:1285051/48‑1 (MQ=255)                      tttattGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:81663/41‑1 (MQ=255)                          ttGAAAAGATAAAGCATTAAAACTGGGAAACTATaaa  <  1:559198/37‑1 (MQ=255)                                                              | TTTAGCAACTATCTTTTTTATTTTATTGAAAAGATAAAGCATTAAAACTGGGAAACTATAAA  >  minE/2539392‑2539453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑