mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 115 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,763,556 | 0 | T | C | 51.3% | ‑1.4 / 174.8 | 117 | noncoding (288/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 2,443,840 | 0 | G | C | 42.4% | 31.9 / 83.2 | 66 | N432K (AAC→AAG) | ilvD | dihydroxyacid dehydratase |
| * | minE | 2,852,314 | 0 | G | T | 41.2% | 89.2 / 68.4 | 68 | G286G (GGC→GGA) | rsgA | ribosome small subunit‑dependent GTPase A |
| * | minE | 2,852,316 | 0 | C | A | 41.2% | 89.1 / 67.7 | 68 | G286C (GGC→TGC) | rsgA | ribosome small subunit‑dependent GTPase A |
| * | minE | 2,443,843 | 0 | T | C | 40.6% | 42.5 / 82.4 | 69 | E431E (GAA→GAG) | ilvD | dihydroxyacid dehydratase |
| * | minE | 2,852,319 | 0 | G | C | 40.6% | 56.4 / 82.9 | 69 | Q285E (CAG→GAG) | rsgA | ribosome small subunit‑dependent GTPase A |
| * | minE | 2,852,322 | 0 | T | G | 40.0% | 32.0 / 101.5 | 70 | T284P (ACT→CCT) | rsgA | ribosome small subunit‑dependent GTPase A |
| * | minE | 2,852,324 | 0 | A | C | 40.0% | 33.6 / 100.3 | 70 | I283S (ATC→AGC) | rsgA | ribosome small subunit‑dependent GTPase A |
| * | minE | 460,687 | 0 | G | T | 39.3% | 113.1 / 79.3 | 84 | T79T (ACC→ACA) | gltA | citrate synthase |
| * | minE | 751,711 | 0 | G | T | 38.9% | 78.6 / 46.9 | 54 | G503G (GGC→GGA) | mfd | transcription‑repair coupling factor |
| * | minE | 2,443,855 | 0 | A | G | 38.4% | 55.7 / 82.6 | 73 | G427G (GGT→GGC) | ilvD | dihydroxyacid dehydratase |
| * | minE | 2,111,517 | 0 | C | A | 36.9% | 95.7 / 57.8 | 65 | A54E (GCG→GAG) | agaI | galactosamine‑6‑phosphate isomerase |
| * | minE | 2,443,819 | 0 | T | G | 36.4% | 32.0 / 100.0 | 77 | A439A (GCA→GCC) | ilvD | dihydroxyacid dehydratase |
| * | minE | 2,443,822 | 0 | C | G | 36.4% | 71.3 / 81.8 | 77 | T438T (ACG→ACC) | ilvD | dihydroxyacid dehydratase |
| * | minE | 2,443,825 | 0 | T | C | 36.4% | 74.4 / 79.7 | 77 | K437K (AAA→AAG) | ilvD | dihydroxyacid dehydratase |
| * | minE | 2,443,828 | 0 | C | G | 36.4% | 73.1 / 84.0 | 77 | V436V (GTG→GTC) | ilvD | dihydroxyacid dehydratase |
| * | minE | 2,467,267 | 0 | C | T | 36.0% | 49.0 / 49.1 | 50 | A244V (GCA→GTA) | atpA | F1 sector of membrane‑bound ATP synthase, alpha subunit |
| * | minE | 2,443,795 | 0 | T | C | 35.9% | 76.7 / 80.5 | 78 | K447K (AAA→AAG) | ilvD | dihydroxyacid dehydratase |
| * | minE | 2,443,798 | 0 | G | C | 35.9% | 79.2 / 80.6 | 78 | L446L (CTC→CTG) | ilvD | dihydroxyacid dehydratase |
| * | minE | 2,443,810 | 0 | A | G | 35.4% | 76.8 / 82.2 | 79 | D442D (GAT→GAC) | ilvD | dihydroxyacid dehydratase |