| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 436833 | 19 (2.100) | 11 (1.220) | 8/108 | NT | 43.1% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | Exported | 1803907 = | 10 (1.110) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGT > Exported/436770‑436900 | acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg < 1:275512/71‑1 (MQ=255) cacaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg > 1:369456/1‑70 (MQ=255) cacaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg > 1:289149/1‑70 (MQ=255) acaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCa < 1:515353/71‑1 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg < 1:259687/60‑1 (MQ=255) cAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaag < 1:176205/70‑1 (MQ=255) gTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa < 1:74656/52‑1 (MQ=255) cGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctg > 1:43645‑M1/1‑50 (MQ=255) aTGCTATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca < 1:475417/68‑1 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:214420/71‑1 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:191632‑M1/71‑28 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:367588‑M1/71‑28 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaat > 1:123639‑M1/1‑41 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGc < 1:372993/70‑1 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATgg > 1:452525/1‑67 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCa > 1:379710/1‑68 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAAt > 1:271923/1‑71 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAAt > 1:316807/1‑71 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCcac > 1:486553/1‑61 (MQ=255) aaGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAggtt > 1:40110/1‑69 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgccca < 1:313638‑M1/70‑51 (MQ=255) aGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:286000/1‑46 (MQ=255) aGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa > 1:275815/1‑46 (MQ=255) aGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa < 1:456630/71‑1 (MQ=255) tttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:207975‑M1/59‑43 (MQ=255) ttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaa > 1:233286‑M1/1‑16 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:10442‑M1/70‑58 (MQ=255) cGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGc < 1:105968/70‑1 (MQ=255) ggAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:81504‑M1/54‑43 (MQ=255) aaCTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatg > 1:139719‑M1/1‑10 (MQ=255) aaCTATCTAAcggctgaaattaatgaggtcatacccaaat > 1:163211‑M1/1‑10 (MQ=255) aaCTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaa > 1:10236/1‑71 (MQ=255) cTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGt > 1:489672/1‑71 (MQ=255) | ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGT > Exported/436770‑436900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |