| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 436833 | 19 (2.100) | 11 (1.220) | 8/108 | NT | 43.1% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | Exported | 1803907 = | 10 (1.110) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
CACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA > Exported/1803847‑1803971 | cacaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAAt > 1:17632/1‑70 (MQ=255) acaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTa < 1:257418/71‑1 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa > 1:430240/1‑65 (MQ=255) cgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTg > 1:43645‑M2/51‑56 (MQ=255) aTTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCa < 1:471157/71‑1 (MQ=255) aattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCa < 1:367588‑M2/27‑1 (MQ=255) aattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCa < 1:191632‑M2/27‑1 (MQ=255) tcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAAt > 1:123639‑M2/42‑71 (MQ=255) aaaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCgg > 1:189132/1‑44 (MQ=255) aaaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAAt > 1:437862/1‑71 (MQ=255) aTACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGa < 1:494161/43‑1 (MQ=255) cATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGt < 1:8093/70‑1 (MQ=255) tGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa < 1:438490/70‑1 (MQ=255) aggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa < 1:313638‑M2/50‑1 (MQ=255) tttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:207975‑M2/42‑1 (MQ=255) ttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGaa > 1:233286‑M2/17‑71 (MQ=255) cggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa < 1:10442‑M2/57‑1 (MQ=255) ggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:81504‑M2/42‑1 (MQ=255) aactatctaaCGGCTGAAATTAATGAGGTCATACCCAAAt > 1:163211‑M2/11‑40 (MQ=255) aactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATg > 1:139719‑M2/11‑71 (MQ=255) ttACTATATCGGCTGAAATTAATGAGGTCATAACCAAATGGATAGTTCGtt < 1:70983/51‑1 (MQ=255) cTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTaa < 1:511579/71‑1 (MQ=255) | CACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA > Exported/1803847‑1803971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |