| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4738 = | 85 (1.040) | 7 (0.100) | 4/86 | NT | 9.2% | coding (1005/1287 nt) | thrC | threonine synthase |
| ? | AP009048 | 4758 = | 63 (0.880) | coding (1025/1287 nt) | thrC | threonine synthase | |||||
CACGATAAGCTACGGCAGCGTGCGGCTCCGAAGTGTAGCCCAGTTCTTTTAACTCACGCATTGTCTGTTGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4811‑4738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgtgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCAG > AP009048/4758‑4825 CACGATAAGCTACGGCAGCGTGCGGCTCCGAAGTGTAGCCCAGTTCTTTTAACTCACGCATTGTCTGTTGC < 1:1713461/71‑1CACGATAAGCTACGGCAGCGTGCGGCTCCGAAGTGTAGCCCAGTTCTTTTAACTCACGCATTGTCTGTTGC < 1:1723278/71‑1CACGATAAGCTACGGCAGCGTGCGGCTCCGAAGTGTAGCCCAGTTCTTTTAACTCACGCATTGTCTGTTGC > 1:7358900/1‑71 ACGATAAGCTACGGCAGCGTGCGGCTCCGAAGTGTAGCCCAGTTCTTTTAACTCACGCATTGTCTGTTGCG > 1:1586047/1‑71 AAGCTACGGCAGCGTGCGGCTCCGAAGTGTAGCCCAGTTCTTTTAACTCACGCATTGTCTGTTGCGT > 1:1183326/1‑67 GCTACGGCAGCGTGCGGCTCCGAAGTGTAGCCCAGTTCTTTTAACTCACGCATTGTCTGTT > 1:3575863/1‑61 CGAAGTGTAGCCCAGTTCTTTTAACTCACGCATTGTCTGTTGC > 1:4032433/1‑43 CCAGTTCTTTTAACTCACGCATTGTCTGTTGCGTG > 1:7426975/1‑35 CCAGTTCTTTTAACTCACGCATTGTCTGTTGCGTG > 1:6484001/1‑35 CCAGTTCTTTTAACTCACGCATTGTCTGTTGCGTG > 1:5524757/1‑35 CCAGTTCTTTTAACTCACGCATTGTCTGTTGCGTG > 1:1168117/1‑35 AACTCACGCATTGTCTGTTGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCT > 1:2941431/1‑71 AACTCACGCATTGTCTGTTGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCT > 1:2950801/1‑71 CTCACGCATTGTCTGTTGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTA < 1:4417805/71‑1 CTCACGCATTGTCTGTTGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTA < 1:3444095/71‑1 TCACGCATTGTCTGTTGCGTGAGTTAAAAGAACTGGGGTACACTTC < 1:2530876/46‑1 TCACGCATTGTCTGTTGCGTGAGTTAAAAGAACTGGGCTACACTTC < 1:4103605/46‑1 TTGTCTGTTGCGTGAGTTAAAAGAACTGGGCTACACT < 1:5295568/37‑1 TGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGAT > 1:2253983/1‑71 CGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCA < 1:4737648/71‑1 CGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCA < 1:5707058/71‑1 GTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCAG > 1:5227493/1‑71 TGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGC < 1:7166610/48‑1 GAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGC < 1:2352590/61‑1 CACGATAAGCTACGGCAGCGTGCGGCTCCGAAGTGTAGCCCAGTTCTTTTAACTCACGCATTGTCTGTTGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4811‑4738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgtgAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTATCGTGCGCTGCGTGATCAG > AP009048/4758‑4825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |