| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4738 = | 85 (1.040) | 7 (0.100) | 4/86 | NT | 9.2% | coding (1005/1287 nt) | thrC | threonine synthase |
| ? | AP009048 | 4758 = | 63 (0.880) | coding (1025/1287 nt) | thrC | threonine synthase | |||||
Only 100 of 114 total aligned reads displayed.
TGGAAGAGTTGTTCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTAT > AP009048/4668‑4807 | tgGAAGAGTTGTTCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAAcc < 1:433326/71‑1 (MQ=255) gAAGAGTTGTTCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAAcc > 1:4683441/1‑69 (MQ=255) ctgatcacgcagcgcacgataagctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCAc > 1:5227493‑M1/69‑71 (MQ=255) tgatcacgcagcgcacgataagctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACg < 1:4737648‑M1/4‑1 (MQ=255) tgatcacgcagcgcacgataagctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACg < 1:5707058‑M1/4‑1 (MQ=255) aaGAGTTGTTCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCAc > 1:4567165/1‑70 (MQ=255) agagTTGTTCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGc < 1:4045655/71‑1 (MQ=255) agagTTGTTCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGc < 1:4036614/71‑1 (MQ=255) agagTTGTTCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGc < 1:2041035/71‑1 (MQ=255) gagTTGTTCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGc > 1:852593/1‑70 (MQ=255) atcacgcagcgcacgataagctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACGCa > 1:2253983‑M1/66‑71 (MQ=255) gttCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAg > 1:5119711/1‑70 (MQ=255) gttCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGa > 1:1913213/1‑71 (MQ=255) gttCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGa > 1:3885519/1‑71 (MQ=255) gcagcgcacgataagctacggcagcgtgcggctccgaagtgtagcccagttcttttaactc < 1:2352590‑M1/1‑1 (MQ=255) ttCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGAc < 1:5581200/71‑1 (MQ=255) ttCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGAc < 1:5718590/71‑1 (MQ=255) cgccgcAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACaa < 1:6282079/70‑1 (MQ=255) gccgcAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATg < 1:2341415/71‑1 (MQ=255) ccgcAAAATCTGGGAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGc < 1:6091787/71‑1 (MQ=255) aaaaTCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGt > 1:4191226/1‑69 (MQ=255) taagctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACGCAACAGACAATGCGTGAg < 1:4417805‑M1/22‑1 (MQ=255) taagctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACGCAACAGACAATGCGTGAg < 1:3444095‑M1/22‑1 (MQ=255) aaaTCTGGCAACTGAAAGAGCTGGGTTATGCATCCGTGGATGATGAAACCACGCaa > 1:1260827/1‑56 (MQ=255) aaaTCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACa > 1:216090/1‑58 (MQ=255) aaaTCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAg > 1:901148/1‑71 (MQ=255) aaaTCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAg > 1:7794607/1‑71 (MQ=255) agctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACGCAACAGACAATGCGTGAGtt > 1:2941431‑M1/48‑71 (MQ=255) agctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCACGCAACAGACAATGCGTGAGtt > 1:2950801‑M1/48‑71 (MQ=255) aTCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGt > 1:1603402/1‑70 (MQ=255) gctacggcagcgtgcggctccgaagtgtagcccagttcttttaactCa < 1:7166610‑M1/2‑1 (MQ=255) gCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTa < 1:2969641/67‑1 (MQ=255) gCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAg < 1:5274147/71‑1 (MQ=255) aCTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAAc > 1:2850292/1‑71 (MQ=255) aCTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAAc < 1:6453404/71‑1 (MQ=255) aCTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAAc < 1:1205637/71‑1 (MQ=255) aCTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAAc > 1:5637213/1‑71 (MQ=255) cTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACt > 1:3338878/1‑71 (MQ=255) cTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACt < 1:4556294/71‑1 (MQ=255) tGAAAGAGCTTGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTaaaa < 1:1241691/65‑1 (MQ=255) tGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTaaaa < 1:6474161/65‑1 (MQ=255) tGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTg > 1:7420747/1‑71 (MQ=255) gAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:751247/1‑71 (MQ=255) aaaGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTg < 1:354959/69‑1 (MQ=255) aaGAGCTGGGTTATGCAGCCGTGGATGATGAAACCa > 1:2580881/1‑36 (MQ=255) agagCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGc > 1:5777462/1‑70 (MQ=255) cTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTacac > 1:5120562/1‑71 (MQ=255) tGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTa < 1:4317072/53‑1 (MQ=255) ggTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:6514309/1‑61 (MQ=255) ggTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:3952059/1‑61 (MQ=255) ggTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACtt < 1:4648990/70‑1 (MQ=255) ggTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACt < 1:1849453/69‑1 (MQ=255) ggTTATGCAGCCGTGGATGATGAAAACACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTc > 1:3005463/1‑71 (MQ=255) gaagtgtagcccagttcttttaactCACGCAACAGACAATGCGTGa < 1:4103605‑M1/21‑1 (MQ=255) gaagtgtaccccagttcttttaactCACGCAACAGACAATGCGTGa < 1:2530876‑M1/21‑1 (MQ=255) gTTATGCAGCCGTGGATGATGAAACCACGCAAGAGACAATGCGTg < 1:5549072/45‑1 (MQ=255) gTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAAt < 1:1220237/40‑1 (MQ=255) gTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTa > 1:2823575/1‑64 (MQ=255) gTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTa > 1:5955199/1‑64 (MQ=255) gTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCg > 1:2754915/1‑71 (MQ=255) tATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGc > 1:2791002/1‑40 (MQ=255) tATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGc > 1:4498778/1‑40 (MQ=255) agtgtagcccagttcttttaactCACGCAACAGACaa < 1:5295568‑M1/14‑1 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACaa > 1:3506193/1‑36 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACaa > 1:7004863/1‑36 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACaa > 1:1247558/1‑36 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACaa > 1:1162501/1‑36 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAg < 1:2845623/51‑1 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAg < 1:7904570/51‑1 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGc < 1:4498164/59‑1 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGc < 1:3626817/59‑1 (MQ=255) aTGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAg > 1:4103289/1‑71 (MQ=255) tGCAGCCGTGGATGATGAAACCACGCAACAGACaa > 1:5527784/1‑35 (MQ=255) aGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTa < 1:1492229/57‑1 (MQ=255) aGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTc > 1:1855200/1‑63 (MQ=255) gCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCa < 1:6545213/71‑1 (MQ=255) gCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCa < 1:323869/71‑1 (MQ=255) ccGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGa < 1:2441333/64‑1 (MQ=255) ccGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGa < 1:900050/64‑1 (MQ=255) gTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGc > 1:1565548/1‑71 (MQ=255) gTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGc > 1:239853/1‑71 (MQ=255) gTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGc > 1:3868576/1‑71 (MQ=255) ggATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTg > 1:3411172/1‑71 (MQ=255) gatgatGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGc > 1:3061980/1‑71 (MQ=255) atgatgAAACCACGCAACAGACAATGCGTGAGTTAAAAGa < 1:3788184/40‑1 (MQ=255) atgatgAAACCACGCAACAGACAATGCGTGAGTTAAAAGa < 1:7160459/40‑1 (MQ=255) atgatgAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGCCt < 1:3404985/48‑1 (MQ=255) tgatgaAACCACGCAACAGACAATGCGTGAGTTAAAAGaa < 1:3543707/40‑1 (MQ=255) tgatgaAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCg < 1:6375859/71‑1 (MQ=255) tgatgaAACCACCCAACAGACAATGCGTGAGTTAAAAGaa < 1:2989099/40‑1 (MQ=255) gatgaAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCg > 1:581685/1‑70 (MQ=255) tgaAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAg > 1:790989/1‑71 (MQ=255) gaAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGt > 1:2756902/1‑68 (MQ=255) gaAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGc > 1:968916/1‑71 (MQ=255) aCCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTa > 1:2494480/1‑71 (MQ=255) ccACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTAt < 1:7739825/71‑1 (MQ=255) CACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:7426975‑M1/1‑35 (MQ=255) CACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:6484001‑M1/1‑35 (MQ=255) CACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:5524757‑M1/1‑35 (MQ=255) CACGCAACAGACAATGCGTGAGTTAAAAGAACTgg > 1:1168117‑M1/1‑35 (MQ=255) | TGGAAGAGTTGTTCCGCCGCAAAATCTGGCAACTGAAAGAGCTGGGTTATGCAGCCGTGGATGATGAAACCACGCAACAGACAATGCGTGAGTTAAAAGAACTGGGCTACACTTCGGAGCCGCACGCTGCCGTAGCTTAT > AP009048/4668‑4807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |