| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 81461 | 83 (1.020) | 5 (0.070) | 3/86 | NT | 5.8% | coding (498/1092 nt) | leuB | 3‑isopropylmalate dehydrogenase |
| ? | AP009048 | = 81467 | 89 (1.250) | coding (492/1092 nt) | leuB | 3‑isopropylmalate dehydrogenase | |||||
CGTCACTTTGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/81386‑81461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatacCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAAGCGTCGC < AP009048/81467‑81398 CGTCACTTTGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGT > 1:6465795/1‑71 GTCACTTTGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTG < 1:1466095/71‑1 TCACTTTGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGA < 1:1850969/71‑1 TCACTTTGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGA < 1:3250851/71‑1 ACTTTGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATA < 1:7551145/71‑1 ACTTTGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATA < 1:442658/71‑1 ACTTTGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATA > 1:2672777/1‑71 TGTGTCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATA > 1:353890/1‑67 TGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATA > 1:7802766/1‑67 TGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATA > 1:2092086/1‑67 TGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATA > 1:2688433/1‑67 TGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGT > 1:2651490/1‑63 TGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGT < 1:4418225/51‑1 CGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATA < 1:1193929/53‑1 TTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATACCGAGGTGTATCA < 1:881287/58‑1 TTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATACCGAGGTGTATCA < 1:2609366/58‑1 TCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGA < 1:5262209/42‑1 TCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGA < 1:4365110/42‑1 TGCGGGCGATACGTTCGATCTCAAAACGGTGATACCGAGGTGTATCA > 1:2578724/1‑47 GGGCGATACGTTCGATCTCAAAACGGTGATACCGAGGTGTAT < 1:4701802/42‑1 GGGCGATACGTTCGATCTCAAAACGGTGATACCGAGGTGTAT < 1:2267132/42‑1 TGATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAAGC > 1:4012126/1‑71 TGATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAA < 1:4169076/69‑1 TGATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAA < 1:4749290/69‑1 TGATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAAT > 1:4158338/1‑59 TGATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAAT > 1:563758/1‑59 TGATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAAT > 1:3477758/1‑59 TGATACCGAGGTGTATCACCGTTTTGAGATCGAACGTAT > 1:6715147/1‑39 TGATACCGAGGTGTATCACCGTTTTGAGATCGAACGTAT > 1:5169385/1‑39 TGATACCGAGGTGTATCACCGTTTTGAGATAGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAA < 1:1619478/69‑1 ATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAAGCG < 1:7033047/70‑1 ATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCG < 1:2492416/64‑1 ATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCG < 1:4533120/64‑1 ATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAA > 1:3272676/1‑56 ATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAA > 1:4352793/1‑56 ATACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAA > 1:5865687/1‑56 TACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAAGCGTC < 1:3083527/71‑1 TACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAAGCGTC < 1:3324110/71‑1 ACCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCA > 1:2249825/1‑64 CCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAAGCGTCGC > 1:1157667/1‑71 CCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAAGCGTC > 1:4867530/1‑69 CCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAAGCGTC > 1:5931018/1‑69 CCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAAGCGTC > 1:4332507/1‑69 CCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGT < 1:5140199/48‑1 CCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGT < 1:6481702/48‑1 CCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGT < 1:2138041/48‑1 CCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGT < 1:5445909/48‑1 CCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCAT > 1:23205/1‑43 CCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCA > 1:1956825/1‑42 CGTCACTTTGTGGCGACGCTTGCGAGCAGATTCAAACGCGATGCGGGCGATACGTTCGATCTCAAAACGGTGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/81386‑81461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatacCGAGGTGTATCACCGTTTTGAGATCGAACGTATCGCCCGCATCGCGTTTGAATCTGCTCGCAAGCGTCGC < AP009048/81467‑81398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |