| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 89227 = | 71 (0.870) | 5 (0.070) | 4/84 | NT | 7.6% | intergenic (+195/‑407) | fruR/mraZ | DNA‑binding transcriptional dual regulator/conserved hypothetical protein |
| ? | AP009048 | 89264 = | 60 (0.860) | intergenic (+232/‑370) | fruR/mraZ | DNA‑binding transcriptional dual regulator/conserved hypothetical protein | |||||
GCTTGATGCCAGCGGGTTTGCGCAAAAGCAAAGAAAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGTAACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/89303‑89227‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTTAACC > AP009048/89264‑89333 GCTTGATGCCAGCGGGTTTGCGCAAAAGCAAAGAAAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGT < 1:1188728/71‑1GCTTGATGCCAGCGGGTTTGCGCAAAAGCAAAGAAAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGT < 1:7469193/71‑1 TTGATGCCAGCGGGTTTGCGCAAAAGCAAAGAAAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGTAA > 1:7064458/1‑71 TGATGCCAGCGGGTTTGCGCAAAAGCAAAGAAAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGTAA > 1:2146163/1‑70 TGATGCCAGCGGGTTTGCGCAAAAGCAAAGAAAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGTAA > 1:1033829/1‑70 CAAAGAAAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGT < 1:3761817/43‑1 AAGAAAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGT > 1:6329889/1‑41 AAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGT < 1:3715427/37‑1 AAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGT < 1:527601/37‑1 ATCGGCAATTCATCGCCGCATGTAACAAACCCTTTTCTTTGCTTTTGCGCAAACCCG > 1:4459777/1‑57 ATCGGCAATTCATCGCCGCATGTAACAAACACTTTTCTTTGCTTTTG < 1:2809894/47‑1 CGGCAATTCATCGCCGCATGTAACAAACACTTTTCTTTGCTTTTGCGCAAACCC > 1:6324277/1‑54 CGGCAATTCATCGCCGCATGTAACAAACACTTTTCTTTGCTTTTGCGCAAACCC > 1:247496/1‑54 GGCAATTCATCGCCGCATGTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCA < 1:7079745/70‑1 TAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACT < 1:5084712/70‑1 TAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAA > 1:3627014/1‑65 AACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGT > 1:5332102/1‑71 AACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTG < 1:865992/37‑1 ACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTT < 1:471264/71‑1 ACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTT < 1:5512404/71‑1 ACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTT < 1:4178439/71‑1 ACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGT > 1:356666/1‑70 ACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGT < 1:73577/70‑1 ACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACT < 1:6947480/68‑1 CAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTT > 1:3489803/1‑70 AAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAG < 1:4925469/42‑1 AAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAG < 1:6300164/42‑1 AACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTTAAC < 1:3522568/71‑1 AACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCAC < 1:707140/47‑1 AACACTTTTCTTTGCTTTAGCGCAAACCCGCTGGCATCAAGCGCCAC < 1:4705125/47‑1 ACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTTAACC < 1:4512960/71‑1 ACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGC > 1:6837210/1‑41 GCTTGATGCCAGCGGGTTTGCGCAAAAGCAAAGAAAAGTGTTTGTTAAATCGGCAATTCATCGCCGCATGTAACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/89303‑89227‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTTAACC > AP009048/89264‑89333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |