| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 89227 = | 71 (0.870) | 5 (0.070) | 4/84 | NT | 7.6% | intergenic (+195/‑407) | fruR/mraZ | DNA‑binding transcriptional dual regulator/conserved hypothetical protein |
| ? | AP009048 | 89264 = | 60 (0.860) | intergenic (+232/‑370) | fruR/mraZ | DNA‑binding transcriptional dual regulator/conserved hypothetical protein | |||||
Only 100 of 116 total aligned reads displayed.
TTAAGTGATATCGACAGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTTAACC > AP009048/89194‑89333 | aaGTGATATCGACAGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAacac > 1:3927540/1‑71 (MQ=255) tGATATCGACAGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACttt > 1:2120728/1‑71 (MQ=255) atatCGACAGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTc > 1:6138885/1‑71 (MQ=255) tatCGACAGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCt > 1:7053285/1‑71 (MQ=255) tatCGACAGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCt > 1:1881741/1‑71 (MQ=255) tatCGACAGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCt < 1:2580028/71‑1 (MQ=255) aCAGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACTCTTTTc < 1:2598/65‑1 (MQ=255) cAGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCtt < 1:7814216/71‑1 (MQ=255) aGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCtt > 1:4705478/1‑65 (MQ=255) gcgTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTaacaaaca < 1:385737/54‑1 (MQ=255) cgTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTgcg < 1:3921568/71‑1 (MQ=255) tttttGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCa < 1:4212781/71‑1 (MQ=255) tttttGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCa < 1:5570608/71‑1 (MQ=255) ttttGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTgcgc > 1:5830959/1‑69 (MQ=255) ttttGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCa > 1:2827217/1‑70 (MQ=255) tttGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCaa < 1:7515667/70‑1 (MQ=255) cATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAAccc < 1:780370/70‑1 (MQ=255) cATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAAc > 1:5260413/1‑68 (MQ=255) cATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAAc > 1:5054325/1‑68 (MQ=255) cATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCg > 1:5757881/1‑71 (MQ=255) cATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCg < 1:1468775/71‑1 (MQ=255) attTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTg < 1:2088993/70‑1 (MQ=255) ttttGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTgg < 1:5193246/70‑1 (MQ=255) ttttGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTgg < 1:6929914/70‑1 (MQ=255) ttttGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTgg < 1:7062683/70‑1 (MQ=255) TTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCaa > 1:7064458‑M1/1‑71 (MQ=255) TTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCa > 1:1033829‑M1/1‑70 (MQ=255) ACATGCGGCGATGAATTGCCGATTTAACAAACACttt < 1:527601‑M1/37‑1 (MQ=255) ACATGCGGCGATGAATTGCCGATTTAACAAACACttt < 1:3715427‑M1/37‑1 (MQ=255) ACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCtt > 1:6329889‑M1/1‑41 (MQ=255) ACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTg < 1:3761817‑M1/43‑1 (MQ=255) ACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGc < 1:7469193‑M1/71‑1 (MQ=255) ACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGc < 1:1188728‑M1/71‑1 (MQ=255) atcggcaattcatcgccgcatgtaacaaaCCCTTTTCTTTGCTTTTGCGCAAACCCg > 1:4459777‑M2/30‑57 (MQ=255) aTGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAAc > 1:4641404/1‑54 (MQ=255) gcggcgATGAATTGCCGATTTAACAAACACTTTTc > 1:3002047/1‑35 (MQ=255) gcggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTgcgc > 1:1756248/1‑48 (MQ=255) gcggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAAc > 1:3608904/1‑52 (MQ=255) gcggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAAc > 1:3631956/1‑52 (MQ=255) gcggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCca > 1:3497555/1‑71 (MQ=255) gcggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCca > 1:4228314/1‑71 (MQ=255) gcggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCca > 1:7662077/1‑71 (MQ=255) gcggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCca > 1:2512296/1‑71 (MQ=255) cggcaattcatcgccgcatgtaacaaaCACTTTTCTTTGCTTTTGCGCAAAccc > 1:6324277‑M2/28‑54 (MQ=255) cggcaattcatcgccgcatgtaacaaaCACTTTTCTTTGCTTTTGCGCAAAccc > 1:247496‑M2/28‑54 (MQ=255) ggcaattcatcgccgcatgtaacaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCca < 1:7079745‑M2/44‑1 (MQ=255) cggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCca < 1:1002263/70‑1 (MQ=255) cggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCca < 1:6783406/70‑1 (MQ=255) ggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTg < 1:5219019/43‑1 (MQ=255) ggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCcaca > 1:1182335/1‑71 (MQ=255) ggcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCcac < 1:699849/70‑1 (MQ=255) gcgATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCcaca > 1:1318030/1‑70 (MQ=255) gATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCcaca > 1:7539999/1‑68 (MQ=255) gATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCcaca > 1:3840369/1‑68 (MQ=255) tGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTgc > 1:6101256/1‑39 (MQ=255) tGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTgc > 1:166895/1‑39 (MQ=255) tGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTgc > 1:6467456/1‑39 (MQ=255) tGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCa < 1:6477321/42‑1 (MQ=255) tGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCa < 1:2209149/42‑1 (MQ=255) gAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGTCATCaa > 1:585984/1‑57 (MQ=255) aaTTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACg < 1:3561889/70‑1 (MQ=255) ttGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCa > 1:661220/1‑50 (MQ=255) ttGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAg > 1:6283491/1‑55 (MQ=255) tGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGc < 1:7925324/44‑1 (MQ=255) gCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCAt < 1:837938/49‑1 (MQ=255) gCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACg < 1:547308/66‑1 (MQ=255) cGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCa < 1:5676113/49‑1 (MQ=255) cGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCca < 1:1284987/56‑1 (MQ=255) cGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCca < 1:4643198/56‑1 (MQ=255) cGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAg > 1:3303158/1‑71 (MQ=255) aTTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTaa < 1:7888262/65‑1 (MQ=255) aTTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGa > 1:4296184/1‑71 (MQ=255) tttAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGc > 1:1042647/1‑42 (MQ=255) tttAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGc > 1:7709834/1‑42 (MQ=255) tttAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGAc < 1:5548762/71‑1 (MQ=255) tttAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGAc < 1:3265940/71‑1 (MQ=255) ttAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGGGCCACACAGACGTAACAAGGAc > 1:2836885/1‑70 (MQ=255) ttAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCcacaca > 1:4190426/1‑56 (MQ=255) ttAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCcacaca > 1:6904497/1‑56 (MQ=255) ttAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGa < 1:2742927/69‑1 (MQ=255) ttAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGAc < 1:7071365/70‑1 (MQ=255) ttAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACt > 1:5891219/1‑71 (MQ=255) taacaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACaa > 1:3627014‑M2/8‑65 (MQ=255) taacaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACt < 1:5084712‑M2/63‑1 (MQ=255) aacaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTg < 1:865992‑M2/31‑1 (MQ=255) aacaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGt > 1:5332102‑M2/7‑71 (MQ=255) acaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACt < 1:6947480‑M2/63‑1 (MQ=255) acaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGtt < 1:5512404‑M2/66‑1 (MQ=255) acaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGtt < 1:471264‑M2/66‑1 (MQ=255) acaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGtt < 1:4178439‑M2/66‑1 (MQ=255) acaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGt < 1:73577‑M2/65‑1 (MQ=255) acaaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGt > 1:356666‑M2/6‑70 (MQ=255) aaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAg < 1:6300164‑M2/39‑1 (MQ=255) aaaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAg < 1:4925469‑M2/39‑1 (MQ=255) aaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCcac < 1:707140‑M2/45‑1 (MQ=255) aaCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTTAAc < 1:3522568‑M2/69‑1 (MQ=255) aaCACTTTTCTTTGCTTTAGCGCAAACCCGCTGGCATCAAGCGCcac < 1:4705125‑M2/45‑1 (MQ=255) aCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAgc > 1:6837210‑M2/2‑41 (MQ=255) aCACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTTAAcc < 1:4512960‑M2/70‑1 (MQ=255) cacTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAgcgc < 1:2856595/42‑1 (MQ=255) | TTAAGTGATATCGACAGCGCGTTTTTGCATTATTTTGTTACATGCGGCGATGAATTGCCGATTTAACAAACACTTTTCTTTGCTTTTGCGCAAACCCGCTGGCATCAAGCGCCACACAGACGTAACAAGGACTGTTAACC > AP009048/89194‑89333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |