| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 165086 | 64 (0.790) | 6 (0.080) | 3/86 | NT | 9.7% | coding (357/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase |
| ? | AP009048 | = 165097 | 56 (0.780) | coding (368/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase | |||||
ATTGATGGCAAGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/165012‑165086‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accatcTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAGTTGC < AP009048/165097‑165029 ATTGATGGCAAGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGAC > 1:6172700/1‑71 TTGATGGCAAGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGAC > 1:856649/1‑70 GATGGCAAGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCAT > 1:1663497/1‑71 GATGGCAAGGGCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGGCAATCTTGAGCCAGACATGACCA < 1:4106209/70‑1 ACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGATGG < 1:2459000/71‑1 CTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGATGGT > 1:61533/1‑71 CTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGATGG > 1:5802675/1‑70 CTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGATGG > 1:6908523/1‑70 CTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGATG > 1:1561897/1‑69 GGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACC < 1:3008189/43‑1 GGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACC < 1:7667934/43‑1 TTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCA > 1:5149930/1‑38 TTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCA > 1:5559344/1‑38 CAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGAT > 1:2318741/1‑39 ttaACCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGG > 1:1404840/4‑71 ACCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAG < 1:6195877/71‑1 ACCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATT > 1:3374444/1‑41 ACCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGAT > 1:4778869/1‑40 CCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGG > 1:7216431/1‑50 CCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGG > 1:6479710/1‑50 CCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGG > 1:4743769/1‑50 CCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCAT < 1:5580449/46‑1 ATCTCGTTCTTGCTGATGGTCATGTCGGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGG < 1:1517538/65‑1 TCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAGTTGC > 1:6918352/1‑71 TCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGC < 1:5175818/48‑1 TCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGC < 1:1606966/48‑1 CTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAGTTGC > 1:5447323/1‑70 CTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAGT < 1:321593/67‑1 CTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATA < 1:5738449/51‑1 ATTGATGGCAAGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/165012‑165086‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accatcTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAGTTGC < AP009048/165097‑165029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |