New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 16508664 (0.790)6 (0.080) 3/86 NT 9.7% coding (357/2535 nt) mrcB fused glycosyl transferase and transpeptidase
?AP009048 = 165097 56 (0.780)coding (368/2535 nt) mrcB fused glycosyl transferase and transpeptidase

ATTGATGGCAAGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/165012‑165086
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accatcTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAGTTGC  <  AP009048/165097‑165029
                                                                                                                                                
ATTGATGGCAAGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGAC                                                                           >  1:6172700/1‑71
 TTGATGGCAAGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGAC                                                                           >  1:856649/1‑70
   GATGGCAAGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCAT                                                                        >  1:1663497/1‑71
   GATGGCAAGGGCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGGCAATCTTGAGCCAGACATGACCA                                                                         <  1:4106209/70‑1
                    ACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGATGG                                                       <  1:2459000/71‑1
                     CTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGATGGT                                                      >  1:61533/1‑71
                     CTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGATGG                                                       >  1:5802675/1‑70
                     CTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGATGG                                                       >  1:6908523/1‑70
                     CTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGATG                                                        >  1:1561897/1‑69
                             GGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACC                                                                          <  1:3008189/43‑1
                             GGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACC                                                                          <  1:7667934/43‑1
                                   TTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCA                                                                         >  1:5149930/1‑38
                                   TTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCA                                                                         >  1:5559344/1‑38
                                                  CAATCTTGAGCCAGACATGACCATCTCGTTCTTGCTGAT                                                         >  1:2318741/1‑39
                                                                  ttaACCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGG         >  1:1404840/4‑71
                                                                     ACCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAG      <  1:6195877/71‑1
                                                                     ACCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATT                                    >  1:3374444/1‑41
                                                                     ACCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGAT                                     >  1:4778869/1‑40
                                                                      CCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGG                          >  1:7216431/1‑50
                                                                      CCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGG                          >  1:6479710/1‑50
                                                                      CCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGG                          >  1:4743769/1‑50
                                                                      CCATCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCAT                              <  1:5580449/46‑1
                                                                        ATCTCGTTCTTGCTGATGGTCATGTCGGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGG         <  1:1517538/65‑1
                                                                         TCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAGTTGC  >  1:6918352/1‑71
                                                                         TCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGC                         <  1:5175818/48‑1
                                                                         TCTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGC                         <  1:1606966/48‑1
                                                                          CTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAGTTGC  >  1:5447323/1‑70
                                                                          CTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAGT     <  1:321593/67‑1
                                                                          CTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATA                     <  1:5738449/51‑1
                                                                                                                                                
ATTGATGGCAAGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/165012‑165086
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accatcTCGTTCTTGCTGATGGTCATGTCTGGCTCAAGATTGACCATTCGGCCATAAACTGCCGCAGGCAGTTGC  <  AP009048/165097‑165029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.