| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 165086 | 64 (0.790) | 6 (0.080) | 3/86 | NT | 9.7% | coding (357/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase |
| ? | AP009048 | = 165097 | 56 (0.780) | coding (368/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase | |||||
Only 100 of 110 total aligned reads displayed.
AGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGGTGTCGAAAATGACCCGTCCT > AP009048/165022‑165155 | aGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAg < 1:3518074/71‑1 (MQ=255) ggTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAg > 1:7679056/1‑70 (MQ=255) gCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACg < 1:6356491/68‑1 (MQ=255) gCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAga > 1:6918352‑M2/1‑69 (MQ=255) gCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAg > 1:5447323‑M2/1‑69 (MQ=255) cAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACg < 1:7488520/67‑1 (MQ=255) aCTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCtcgttcttgctgatgg < 1:2459000‑M1/71‑17 (MQ=255) aCTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAg < 1:321593‑M2/67‑2 (MQ=255) ctgcctgcGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCtcgttcttgctgatgg > 1:5802675‑M1/1‑54 (MQ=255) ctgcctgcGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCtcgttcttgctgatgg > 1:6908523‑M1/1‑54 (MQ=255) ctgcctgcGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACg < 1:1518385/64‑1 (MQ=255) ctgcctgcGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAgatggt < 1:6195877‑M2/71‑7 (MQ=255) cctgcGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCCGACATGACCATCAGCAAGAACGAgat < 1:1517538‑M2/65‑4 (MQ=255) cctgcGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAgatggttaa > 1:1404840‑M2/1‑62 (MQ=255) gCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAgctgct < 1:3633762/71‑1 (MQ=255) aGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTgg < 1:3396523/71‑1 (MQ=255) aGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTgg < 1:7453140/71‑1 (MQ=255) gTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTg < 1:5375472/60‑1 (MQ=255) gTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTg < 1:5475546/60‑1 (MQ=255) tttATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACga < 1:1439502/52‑1 (MQ=255) tttATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACga < 1:1211304/52‑1 (MQ=255) tttATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACga < 1:615178/52‑1 (MQ=255) tttATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTg < 1:5803308/59‑1 (MQ=255) ttATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAgg > 1:7655163/1‑71 (MQ=255) tATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAg < 1:5738449‑M2/51‑2 (MQ=255) ggCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAgctgct < 1:6726985/62‑1 (MQ=255) gCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAga < 1:5175818‑M2/48‑3 (MQ=255) gCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAga < 1:1606966‑M2/48‑3 (MQ=255) gCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAgctgct > 1:527628/1‑61 (MQ=255) gCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAgctgct > 1:5202787/1‑61 (MQ=255) ccGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAgatgg > 1:7216431‑M2/1‑45 (MQ=255) ccGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAgatgg > 1:4743769‑M2/1‑45 (MQ=255) ccGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAgatgg > 1:6479710‑M2/1‑45 (MQ=255) ccGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGctgctg > 1:934921/1‑61 (MQ=255) cGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGaac > 1:5744787/1‑67 (MQ=255) gAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGaa > 1:2539668/1‑52 (MQ=255) gAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGaa > 1:2540515/1‑52 (MQ=255) gAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGaa > 1:1211049/1‑52 (MQ=255) gAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGaa > 1:2220945/1‑52 (MQ=255) gAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGaa > 1:2141695/1‑52 (MQ=255) aaTGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTg < 1:7874992/49‑1 (MQ=255) aaTGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGa < 1:2688558/50‑1 (MQ=255) aaTGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGctgctg < 1:319335/58‑1 (MQ=255) aaTGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAg > 1:3587318/1‑70 (MQ=255) aTGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAgatgg < 1:5580449‑M2/46‑6 (MQ=255) aTGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAg > 1:1293494/1‑51 (MQ=255) aTGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCa > 1:929479/1‑68 (MQ=255) cAATCTTGAGCCAGACATGACCATCtcgttcttgctgat > 1:2318741‑M1/1‑25 (MQ=255) cAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGt > 1:4774205/1‑70 (MQ=255) aaTCTTGAGCCAGACATGACCATCAGCAAGAACGAgatggt > 1:3374444‑M2/1‑35 (MQ=255) aaTCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGt > 1:1565099/1‑69 (MQ=255) aaTCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGt > 1:2089347/1‑69 (MQ=255) aaTCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTc < 1:2033001/70‑1 (MQ=255) aaTCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCa < 1:1856920/71‑1 (MQ=255) aaTCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCa < 1:404562/71‑1 (MQ=255) aaTCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCa < 1:6523395/71‑1 (MQ=255) aTCTTGAGCCAGACATGACCATCAGCAAGAACGAgatggt > 1:4778869‑M2/1‑34 (MQ=255) aTCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTg < 1:547572/41‑1 (MQ=255) aTCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAg < 1:7785447/71‑1 (MQ=255) tCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGa > 1:5932167/1‑41 (MQ=255) tCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGctgctg > 1:6311163/1‑49 (MQ=255) tCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGctgctg > 1:656169/1‑49 (MQ=255) tCTTGAGCCAGACATGAACATCAGCAAGAACGAGATGGTGAAGctgctg > 1:2986406/1‑49 (MQ=255) cTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGgt > 1:1835346/1‑71 (MQ=255) ttGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGaa > 1:7332008/1‑40 (MQ=255) ttGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGaa > 1:7827474/1‑40 (MQ=255) ttGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGgtg > 1:4240570/1‑71 (MQ=255) gAGCCAGATATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCTACCCAGTATCGTCAGgt < 1:1196920/68‑1 (MQ=255) gAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGgtgt < 1:4771313/70‑1 (MQ=255) gCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGgtgttg > 1:2423432/1‑68 (MQ=255) aCATGACCATCAGCAAGAACGATATGGTGAAgctgc < 1:4679415/36‑1 (MQ=255) aCATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGgtgt > 1:7005575/1‑63 (MQ=255) aCATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGgtgt > 1:5930446/1‑63 (MQ=255) cATGACCATCAGCATGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGGTGTCGAAAATGa > 1:4207257/1‑71 (MQ=255) ttaaccaTCtcgttcttgctgatggtcatgtctggctcaagattgaccattcggccataaactgccgcagg > 1:1404840‑M1/4‑9 (MQ=255) aTGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGGTGTCGaaa < 1:6682906/66‑1 (MQ=255) gACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGGTGTCGaaaa > 1:5739729/1‑65 (MQ=255) aCCATCtcgttcttgctgatggtcatgtctggctcaagattgaccattcggccataaactgccgcaggcag < 1:6195877‑M1/71‑66 (MQ=255) aCCATCtcgttcttgctgatggtcatgtctggctcaagatt > 1:3374444‑M1/1‑6 (MQ=255) aCCATCtcgttcttgctgatggtcatgtctggctcaagat > 1:4778869‑M1/1‑6 (MQ=255) aCCATCAGCAAGAACGAgatggtcatgtctggctcaagattgaccattcggccataaactgccgcaggcag > 1:61533‑M2/1‑17 (MQ=255) aCCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAg > 1:7630317/1‑45 (MQ=255) ccATCtcgttcttgctgatggtcatgtctggctcaagattgaccattcgg > 1:4743769‑M1/1‑5 (MQ=255) ccATCtcgttcttgctgatggtcatgtctggctcaagattgaccattcgg > 1:6479710‑M1/1‑5 (MQ=255) ccATCtcgttcttgctgatggtcatgtctggctcaagattgaccattcgg > 1:7216431‑M1/1‑5 (MQ=255) ccATCtcgttcttgctgatggtcatgtctggctcaagattgaccat < 1:5580449‑M1/46‑42 (MQ=255) ccATCAGCAAGAACGAgatggtcatgtctggctcaagattgaccattcggccataaactgccgcaggcagt < 1:2459000‑M2/71‑56 (MQ=255) ccATCAGCAAGAACGAgatggtcatgtctggctcaagattgaccattcggccataaactgccgcaggcag > 1:5802675‑M2/1‑16 (MQ=255) ccATCAGCAAGAACGAgatggtcatgtctggctcaagattgaccattcggccataaactgccgcaggcag > 1:6908523‑M2/1‑16 (MQ=255) cATCAGCAAGAACGAgatggtcatgtctggctcaagattgaccattcggccataaactgccgcaggcag > 1:1561897‑M2/1‑15 (MQ=255) aTCtcgttcttgctgatggtcatgtcgggctcaagattgaccattcggccataaactgccgcagg < 1:1517538‑M1/65‑63 (MQ=255) aTCAGCAAGAACGAgatggtcatgtctggctcaagattg > 1:2318741‑M2/1‑14 (MQ=255) aTCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGGTGTCGaa < 1:3533459/59‑1 (MQ=255) aTCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGGTGTCGaa < 1:1873925/59‑1 (MQ=255) tctcgttcttgctgatggtcatgtctggctcaagattgaccattcggccataaactgccgcaggcagttgc > 1:6918352‑M1/1‑2 (MQ=255) tctcgttcttgctgatggtcatgtctggctcaagattgaccattcggc < 1:1606966‑M1/48‑47 (MQ=255) tCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGGTGTCGaaaa < 1:6463761/60‑1 (MQ=255) tCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGGTGTCGaaa < 1:5840146/59‑1 (MQ=255) ctcgttcttgctgatggtcatgtctggctcaagattgaccattcggccataaactgccgcaggcagttgc > 1:5447323‑M1/1‑1 (MQ=255) ctcgttcttgctgatggtcatgtctggctcaagattgaccattcggccataaactgccgcaggcagt < 1:321593‑M1/67‑67 (MQ=255) | AGGTCTGGCAACTGCCTGCGGCAGTTTATGGCCGAATGGTCAATCTTGAGCCAGACATGACCATCAGCAAGAACGAGATGGTGAAGCTGCTGGAGGCGACCCAGTATCGTCAGGTGTCGAAAATGACCCGTCCT > AP009048/165022‑165155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |