| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 390073 = | 135 (1.660) | 10 (0.140) | 6/84 | NT | 8.7% | coding (599/1461 nt) | yaiT | hypothetical protein |
| ? | AP009048 | 390095 = | 93 (1.330) | coding (621/1461 nt) | yaiT | hypothetical protein | |||||
GTAAGTATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/390149‑390073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatcaaTATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACAC > AP009048/390095‑390163 GTAAGTATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTA > 1:2102105/1‑71 AAGTATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACA > 1:7319446/1‑71 AAGTATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACA > 1:5873565/1‑71 AAGTATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACA > 1:287329/1‑71 AGTATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACAT > 1:1734769/1‑71 TATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCA < 1:7387047/71‑1 TATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCA < 1:7023626/71‑1 TATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCA < 1:4717382/71‑1 TTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCAA < 1:7583342/70‑1 TTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATC > 1:7062458/1‑68 ataCTTGGGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCA < 1:4988795/65‑1 GAGATAATG‑AATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACA > 1:1282383/1‑58 ATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTTCTTTCTAGATCA < 1:2663749/51‑1 AATATTGATGTTACTTTCTACATCAAGATTTCCAATAACT < 1:4731876/40‑1 ATTGATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAA > 1:4001859/1‑66 ATTGATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGC < 1:3872011/56‑1 TGATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATA > 1:2803826/1‑71 TGATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTA > 1:5640653/1‑50 TGATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTA > 1:119502/1‑50 TGATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTA > 1:1571745/1‑50 ATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACT > 1:7039692/1‑71 ATGTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCA > 1:804637/1‑44 GTTACTTTCTACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGT < 1:6381173/63‑1 ACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACC > 1:257248/1‑71 CATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTA > 1:5987921/1‑60 CAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACA > 1:6566393/1‑71 CAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACA > 1:605617/1‑71 AATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACAC < 1:1681077/71‑1 ATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACAC > 1:7384996/1‑70 ATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACAC > 1:4002604/1‑70 GTAAGTATTACCTTGAGATAATGCAATACCTGCAACGCGGGAGTTATTGGAAATATTGATGTTACTTTCTACATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/390149‑390073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatcaaTATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACAC > AP009048/390095‑390163 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |