| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 483431 = | 128 (1.570) | 5 (0.080) | 4/76 | NT | 5.1% | coding (197/3150 nt) | acrB | multidrug efflux system protein |
| ? | AP009048 | = 3415101 | 88 (1.390) | coding (214/3105 nt) | acrF | multidrug efflux system protein | |||||
CCGCCGGCAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/483510‑483431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggttatcgaTACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCCGGAT < AP009048/3415101‑3415033 CCGCCGGCAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACA < 1:3140225/71‑1CCGCCGGCAGTAACGATCTCC‑CCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAG > 1:5271473/1‑71 CGCCGGCAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAG < 1:4442655/71‑1 CGCCGGCAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAG > 1:7628231/1‑71 CCGGCAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGT < 1:4847085/71‑1 GGCAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTA > 1:7615926/1‑71 GGCAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTA < 1:2485785/71‑1 GCAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACAC < 1:1140826/64‑1 GCAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACAC < 1:6171957/64‑1 CAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATC > 1:4423735/1‑71 AGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCG < 1:2659057/71‑1 AGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCG < 1:177355/71‑1 AGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCG < 1:4780981/71‑1 AGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATC > 1:347384/1‑70 TAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTA < 1:2099460/66‑1 TAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTA < 1:5166506/66‑1 TAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTA < 1:3281306/66‑1 TAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGG > 1:94028/1‑63 ACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATC > 1:7412601/1‑66 ACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATC > 1:6128727/1‑66 ACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATC > 1:578798/1‑66 ACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACAC < 1:7912577/58‑1 GATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAG > 1:674055/1‑58 TCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCG < 1:1152433/61‑1 CCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGG > 1:3143725/1‑54 CGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCGA > 1:4619960/1‑60 GCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCGA < 1:6524917/59‑1 TCCTACCCAGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACAC > 1:6458096/1‑46 CCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTAT > 1:2132856/1‑48 gCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCG < 1:194609/47‑1 CCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCGATACCGTTCATATTCTGTTCGA < 1:432683/70‑1 CGGCGCTGATGCGAAAAGAGTGCAGGACACGGTGACAGAGGTTATCGATACCGTTCATATTCTGTTCGATA < 1:1271503/71‑1 GGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCGATACCGTTCATATTCTGTTCGATA > 1:6183857/1‑70 GCTGATGCGCAGACCGTGCAGGATACGGTGACGCAGGTTATCGATACCGTTCATATTCTGTTCGATAACCT < 1:3904270/71‑1 GCTGATGCGCAGACCGTGCAGGATACGGTGACGCAGGTTATCGATACCGTTCATATTCTGTTCGATAACCT < 1:3904285/71‑1 CAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCc > 1:6535645/1‑55 CAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCA > 1:7721504/1‑56 CAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCA > 1:7091955/1‑56 CAGGTTATCGATACCGTTCATATTCTGTTCGATAA > 1:7546516/1‑35 AGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGC < 1:5705908/71‑1 AGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCAT > 1:3808149/1‑67 AGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCAT > 1:7821072/1‑67 AGGTTATCGATACCGTTCATATTCTGTTCGATAACCT < 1:4052190/37‑1 GGTTATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCG > 1:7195233/1‑71 GTTATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTA < 1:6515938/46‑1 GTTATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTA < 1:7282605/46‑1 TTATCGGTACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACG < 1:6229671/54‑1 TTATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATC < 1:6710174/65‑1 TTATCGATACCGTTCATATTCTGTTCGATAACCTG > 1:4338329/1‑35 TATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCC > 1:2802999/1‑71 TATCGATACCGTTCATATTCTGTTCGATAACCTGC < 1:1336298/35‑1 ATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTTTGCGCATCAGCGCCCG > 1:4490250/1‑71 ATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCCG > 1:303231/1‑71 ATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCC < 1:1415078/70‑1 ATCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTCCGCATCAGCGCCC < 1:6545446/70‑1 TCGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCCGG < 1:7270956/71‑1 CGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCCGGA > 1:7195824/1‑71 CGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCCGG > 1:6984426/1‑70 CGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGC < 1:7320169/58‑1 CGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGC < 1:7685387/58‑1 CGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGC < 1:3688617/58‑1 CGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTG > 1:4936803/1‑46 CGATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGT > 1:2596240/1‑40 GATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCCGGAT < 1:2489155/71‑1 GATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCCGGA < 1:214651/70‑1 GATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCCGGA < 1:2192654/70‑1 ATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCC < 1:6618366/66‑1 ATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCC < 1:7732783/66‑1 ATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCC < 1:961325/66‑1 ATACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGC < 1:919277/64‑1 CCGCCGGCAGTAACGATCTCCGCCTCCTACCCCGGCGCTGATGCGAAAACAGTGCAGGACACGGTGACACAGGTTATCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/483510‑483431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggttatcgaTACCGTTCATATTCTGTTCGATAACCTGCGTCACCGTATCCTGCACGGTCTGCGCATCAGCGCCCGGAT < AP009048/3415101‑3415033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |