| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 786419 | 80 (0.980) | 7 (0.090) | 3/90 | NT | 8.4% | coding (365/1053 nt) | aroG | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| ? | AP009048 | = 786431 | 79 (1.060) | coding (377/1053 nt) | aroG | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible | |||||
GCGTACCACGGTGGGCTGGAAAGGGCTGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/786348‑786419‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggGCTATACGCAGACCGTCGTTGATCTGGAAGCTATTATCCATATGCGGATCGTTAATCAGCCCTTTCC < AP009048/786431‑786365 GCGTACCACGGTGGGCTGGAAAGGGCTGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGACG > 1:1337014/1‑71GCGTACCACGGTGGGCTGGAAAGGGCTGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGACG > 1:6776249/1‑71GCGTACCACGGTGGGCTGGAAAGGGCTGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGAC < 1:2843131/70‑1 CGTACCACGGTGGGCTGGAAAGGGCTGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGACGG > 1:420731/1‑71 TACCACGGTGGGCTGGAAAGGGCTGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGA < 1:7875663/66‑1 TACCACGGTGGGCTGGAAAGGGCTGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGA < 1:7866833/66‑1 TACCACGGTGGGCTGGAAAGGGCTGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGA < 1:7441008/66‑1 ACCACGGTGGGCTGGAAAGGGCTGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGACG > 1:4911760/1‑67 TGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGACGGGCTATACGCAGACCGTC < 1:2614862/63‑1 TGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGACGGGCTATACGCAGACCGTC < 1:2959248/63‑1 ATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGACGGGCTATACGCAGACCGTCGT > 1:849360/1‑63 ATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGACGGGCTATACGCAGACCGTCGT > 1:7755356/1‑63 CGATCCGCATATGGATAATAGCTTCCAGATCAACGACGGGCTATACGCAGACCG < 1:5921163/54‑1 CGATCCGCATATGGATAATAGCTTCCAGATCAACGACGGGCTATACGCAGACCG < 1:6950893/54‑1 CGATCCGCATATGGATAATAGCTTCCAGATCAACGACGGGCTATACGCAGACCG < 1:3389047/54‑1 CCGCATATGGATAATAGCTTCCAGATCAACGACGG > 1:7453915/1‑35 ACGGGCTATACGCAGACCGTCGTTGATCTGGAAGCTATTATCCATATGCGGATCGTTAATCAGCCCTTTC < 1:3998240/70‑1 ACGGGCTATACGCAGACCGTCGTTGATCTGGAAGCTATTATCCATATGCGGATCGTTAATCAGCCCTTTC < 1:5726037/70‑1 ACGGGCTATACGCAGACCGTCGTTGATCTGGAAGCTATTATCCATATG‑GGATCGTTAATCAGCCCTTTCC < 1:2271583/70‑1 ACGGGCTATACGCAGACCGTCGTTGATCTGGAAGCTATTATCCAT > 1:6231659/1‑45 CGGGCTATACGCAGACCGTCGTTGATCTGGAAGCTATTATCCATATGCGGATCGTTAATCAGCCCTTT > 1:225508/1‑68 CGGGCTATACGCAGACCGTCGTTGATCTGGAAGCTAT < 1:238247/37‑1 GGGCTATACGCAGACCTTCGTTGATCTGGAAGCTAT < 1:2752366/36‑1 GGGCTATACGCAGACCGTCGTTGATCTGGAAGCTATTATCCATATGCGGATCGTTAATCAGCCCTTTC < 1:3596502/68‑1 GCGTACCACGGTGGGCTGGAAAGGGCTGATTAACGATCCGCATATGGATAATAGCTTCCAGATCAACGACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/786348‑786419‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggGCTATACGCAGACCGTCGTTGATCTGGAAGCTATTATCCATATGCGGATCGTTAATCAGCCCTTTCC < AP009048/786431‑786365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |