| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 902702 = | 52 (0.640) | 3 (0.040) | 3/86 | NT | 7.0% | coding (709/732 nt) | artI | arginine transporter subunit |
| ? | AP009048 | 902725 = | 34 (0.480) | coding (686/732 nt) | artI | arginine transporter subunit | |||||
CAACACTGAGCTGCAGCAGAAACTCAACACTGCGCTGGAAAAAGTGAAGAAAGATGGCACTTACGAAACCATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/902775‑902702‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatctTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAGTGTTGCCCTGACGTACCGC > AP009048/902725‑902789 CAACACTGAGCTGCAGCAGAAACTCAACACTGCGCTGGAAAAAGTGAAGAAAGATGGCACTTACGAAACCA < 1:7069453/71‑1CAACACTGAGCTGCAGCAGAAACTCAACACTGCGCTGGAAAAAGTGAAGAAAGATGGCACTTACGAAACCA > 1:5936161/1‑71 AACACTGAGCTGCAGCAGAAACTCAACACTGCGCTGGAAAAAGTGAAGAAAGATGGCACTTACGAAACCAT < 1:5896864/71‑1 ACACTGAGCTGCAGCAGAAACTCAACACTGCGCTGGAAAAAATGAAGAAAGATGGCACTTACGAAACCATC > 1:6887409/1‑71 CACTGAGCTGCAGCAGAAACTCAACACTGCGCTGGAAAAAGTGAAGAAAGATGGCACTTACGAAACCATC > 1:3198640/1‑70 CGCTGGAAAAAGTGAAGAAAGATGGCACTTACGAAACCAT > 1:6571259/1‑40 CGCTGGAAAAAGTGAAGAAAGATGGCACTTACGAAACC > 1:5872595/1‑38 TGGAAAAAGTGAAGAAAGATGGCACTTACGAAACC < 1:5794638/35‑1 AAGATGGCACTTACGAAACCATCTTTCTTCACTTTTTCCAGCGCAG < 1:3294472/46‑1 GGCACTTACGAAACCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGA < 1:1434042/47‑1 CACTTACGAAACCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGT > 1:2748459/1‑47 CCATCTTTCTTCACTTTTTCCTGCGCAGTGTTGAGTTTCTGCTGCAGCTCAGTGTTGCCCTGACGTACCG < 1:4067747/70‑1 CCATCTTTCTTCACTTTTTCCAGCGAAGTGTTGAGTTTCTGCTGCAGCTCAGTGTTGCCCTGACGTACCGC > 1:5195828/1‑71 TCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAG < 1:1390646/49‑1 TCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAG < 1:2058117/49‑1 TCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAG < 1:164786/49‑1 TTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAGT > 1:3902977/1‑48 TTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCT > 1:7732268/1‑35 CAACACTGAGCTGCAGCAGAAACTCAACACTGCGCTGGAAAAAGTGAAGAAAGATGGCACTTACGAAACCATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/902775‑902702‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatctTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAGTGTTGCCCTGACGTACCGC > AP009048/902725‑902789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |