| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 902702 = | 52 (0.640) | 3 (0.040) | 3/86 | NT | 7.0% | coding (709/732 nt) | artI | arginine transporter subunit |
| ? | AP009048 | 902725 = | 34 (0.480) | coding (686/732 nt) | artI | arginine transporter subunit | |||||
CCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTG > AP009048/902637‑902759 | gcggtacgtcagggcaacactgagctgcagcagaaactcaacacttcgctggaaaaagtgaagaaAGATgg > 1:5195828‑M1/66‑71 (MQ=255) cggtacgtcagggcaacactgagctgcagcagaaactcaacactgcgcaggaaaaagtgaagaaAGATgg < 1:4067747‑M1/6‑1 (MQ=255) cggcggCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGtt > 1:3561428/1‑71 (MQ=255) cgcTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATgg < 1:6705438/63‑1 (MQ=255) cTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATg > 1:1939296/1‑60 (MQ=255) cTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTaa > 1:3049334/1‑69 (MQ=255) gCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGc > 1:6476119/1‑70 (MQ=255) aaaGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtc > 1:3696681/1‑71 (MQ=255) aaGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtct < 1:1079405/71‑1 (MQ=255) actgagctgcagcagaaactcaacactgcgctggaaaaagtgaagaaa > 1:3902977‑M1/48‑48 (MQ=255) aGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtctt > 1:7680897/1‑71 (MQ=255) ggAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtcttt < 1:4007607/71‑1 (MQ=255) ctgagctgcagcagaaactcaacactgcgctggaaaaagtgaagaaaga < 1:2058117‑M1/3‑1 (MQ=255) ctgagctgcagcagaaactcaacactgcgctggaaaaagtgaagaaaga < 1:164786‑M1/3‑1 (MQ=255) ctgagctgcagcagaaactcaacactgcgctggaaaaagtgaagaaaga < 1:1390646‑M1/3‑1 (MQ=255) aaaaaaTTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtctttct < 1:1976382/71‑1 (MQ=255) aaaaaaTTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTCCCAtctttct < 1:4556302/71‑1 (MQ=255) aaaaaaTTCATTCATCAGGAATTACTTCTCGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtctttct < 1:1257960/71‑1 (MQ=255) aaaaaTTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtctttctt < 1:6884444/71‑1 (MQ=255) aaaaaTTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtctttctt > 1:5908244/1‑71 (MQ=255) aaaaaTTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtctttctt < 1:7758162/71‑1 (MQ=255) aaaaTTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtctttct > 1:861931/1‑69 (MQ=255) aaaaTTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTttcttc < 1:3410872/71‑1 (MQ=255) aaaaTTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTttcttc < 1:7155480/71‑1 (MQ=255) aaaTTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCa < 1:3064563/71‑1 (MQ=255) ttcattcaTCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACtt < 1:344135/71‑1 (MQ=255) ttcatCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTc < 1:3801571/71‑1 (MQ=255) agaaactcaacactgcgctggaaaaagtgaagaaa > 1:7732268‑M1/35‑35 (MQ=255) catcaGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACtttt > 1:3025566/1‑67 (MQ=255) atcaGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGt < 1:355579/47‑1 (MQ=255) atcaGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGt < 1:6855694/47‑1 (MQ=255) tcaGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGt < 1:7846206/46‑1 (MQ=255) actcaacactgcgctggaaaaagtgaagaaAGATGGTTTCGTAAGTg > 1:2748459‑M1/31‑47 (MQ=255) caGGAATTACTTCTGGAACCATTTGTTGTAGATGGttt > 1:7911100/1‑38 (MQ=255) caGGAATTACTTCTGGAACCATTTGTTGTAGATGGttt > 1:3135379/1‑38 (MQ=255) caGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTc > 1:4453959/1‑39 (MQ=255) caGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGc > 1:6502633/1‑47 (MQ=255) aaGGAATTACTTCTGGAACCATTTGTTGTAGATGGttt > 1:4468623/2‑38 (MQ=255) tcaacactgcgctggaaaaagtgaagaaAGATGGTTTCGTAAGTGcc < 1:1434042‑M1/19‑1 (MQ=255) aGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGc > 1:1652212/1‑46 (MQ=255) aGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAgcg > 1:7490771/1‑70 (MQ=255) gAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtctttct > 1:6864877/1‑53 (MQ=255) gAATTAATTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCAAGCGCAg > 1:197344/1‑71 (MQ=255) aTTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAgtg > 1:5283095/1‑71 (MQ=255) ttACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtct < 1:1060888/46‑1 (MQ=255) ctgcgctggaaaaagtgaagaaAGATGGTTTCGTAAGTGCCAtctt < 1:3294472‑M1/24‑1 (MQ=255) aCTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAg > 1:6496567/1‑36 (MQ=255) aCTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtcttt > 1:3019133/1‑46 (MQ=255) aCTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtcttt > 1:7244558/1‑46 (MQ=255) aCTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGtt > 1:77061/1‑70 (MQ=255) cTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTg < 1:5849622/70‑1 (MQ=255) cTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCa > 1:515096/1‑56 (MQ=255) cTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTATTCACtttt > 1:2136075/1‑52 (MQ=255) ggAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGttt < 1:2403425/70‑1 (MQ=255) gAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGtt < 1:5079591/68‑1 (MQ=255) gAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGtt < 1:7676718/68‑1 (MQ=255) gAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTc < 1:1109535/70‑1 (MQ=255) cATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTctg > 1:3153901/1‑68 (MQ=255) cATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTctg > 1:6317783/1‑68 (MQ=255) aTTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGa > 1:5712762/1‑60 (MQ=255) tttGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACtttt < 1:5015057/43‑1 (MQ=255) tgttgtAGATGGTTTCGTAAGTGCCATCTTTCTTCACttt > 1:7758428/1‑40 (MQ=255) tgttgtAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCa > 1:2955342/1‑45 (MQ=255) gttgtAGATGGTTTCGTAAGTGCCATCTTTCTTCa > 1:6009862/1‑35 (MQ=255) gttgtAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAg > 1:3196766/1‑50 (MQ=255) gtAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAgcg < 1:4944410/44‑1 (MQ=255) gtAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAgt > 1:6457472/1‑48 (MQ=255) | CCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTG > AP009048/902637‑902759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |