New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 1169738 =47 (0.580)4 (0.060) 3/82 NT 11.2% intergenic (+23/+39) ycfJ/ycfQ hypothetical protein/predicted DNA‑binding transcriptional regulator
?AP009048 1169765 = 24 (0.350)intergenic (+50/+12) ycfJ/ycfQ hypothetical protein/predicted DNA‑binding transcriptional regulator

GGAACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1169815‑1169738
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaggggcTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTT  >  AP009048/1169765‑1169832
                                                                                                                                                  
GGAACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAAT                                                                             <  1:6997100/71‑1
 GAACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATG                                                                            <  1:4594326/71‑1
  AACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGA                                                                           <  1:4301639/71‑1
   ACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAG                                                                          <  1:1063700/71‑1
   ACGACTTTGCGTTTATGGCCCGAACTCGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAG                                                                          >  1:6366649/1‑71
    CGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGG                                                                         >  1:500035/1‑71
     GACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGG                                                                        <  1:3533341/71‑1
       CTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCATCCTGAGCGAATGAGGGGC                                                                      >  1:6253630/1‑71
        TTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGGG                                                                       >  1:7472077/1‑69
               TTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGG                                                                         <  1:4274471/60‑1
                                  AATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGG                                                                        >  1:4181922/1‑42
                                  AATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGG                                                                        >  1:6804771/1‑42
                                                      CCTCAGCCTGAGCGAATGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCG                       >  1:1223513/1‑71
                                                      CCTCAGCCTGAGCGAATGAGGGGCTTTTTTTGCGACTTATTTCACCAG                                              <  1:4637524/48‑1
                                                       CTCAGCCTGAGCGAATGAGGGGCTTTTTTTGCGACTTATTTCACCAG                                              <  1:6178542/47‑1
                                                        TCAGCCTGAGCGAATGAGGGGCTTTTTTTGCGACTTATTTCACCAGTT                                            >  1:4608637/1‑48
                                                                          GGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGT   <  1:2518719/71‑1
                                                                           GGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTT  <  1:4003995/71‑1
                                                                           GGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTT  <  1:3994678/71‑1
                                                                           GGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTT  >  1:1449056/1‑71
                                                                                                                                                  
GGAACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1169815‑1169738
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaggggcTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTT  >  AP009048/1169765‑1169832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.