| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1169738 = | 47 (0.580) | 4 (0.060) | 3/82 | NT | 11.2% | intergenic (+23/+39) | ycfJ/ycfQ | hypothetical protein/predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | 1169765 = | 24 (0.350) | intergenic (+50/+12) | ycfJ/ycfQ | hypothetical protein/predicted DNA‑binding transcriptional regulator | |||||
GGAACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1169815‑1169738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaggggcTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTT > AP009048/1169765‑1169832 GGAACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAAT < 1:6997100/71‑1 GAACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATG < 1:4594326/71‑1 AACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGA < 1:4301639/71‑1 ACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAG < 1:1063700/71‑1 ACGACTTTGCGTTTATGGCCCGAACTCGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAG > 1:6366649/1‑71 CGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGG > 1:500035/1‑71 GACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGG < 1:3533341/71‑1 CTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCATCCTGAGCGAATGAGGGGC > 1:6253630/1‑71 TTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGGG > 1:7472077/1‑69 TTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGG < 1:4274471/60‑1 AATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGG > 1:4181922/1‑42 AATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGG > 1:6804771/1‑42 CCTCAGCCTGAGCGAATGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCG > 1:1223513/1‑71 CCTCAGCCTGAGCGAATGAGGGGCTTTTTTTGCGACTTATTTCACCAG < 1:4637524/48‑1 CTCAGCCTGAGCGAATGAGGGGCTTTTTTTGCGACTTATTTCACCAG < 1:6178542/47‑1 TCAGCCTGAGCGAATGAGGGGCTTTTTTTGCGACTTATTTCACCAGTT > 1:4608637/1‑48 GGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGT < 1:2518719/71‑1 GGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTT < 1:4003995/71‑1 GGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTT < 1:3994678/71‑1 GGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTT > 1:1449056/1‑71 GGAACGACTTTGCGTTTATGGCCCGAACTGGTGAAATAAGTCGCAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1169815‑1169738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaggggcTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTT > AP009048/1169765‑1169832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |