| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1169738 = | 47 (0.580) | 4 (0.060) | 3/82 | NT | 11.2% | intergenic (+23/+39) | ycfJ/ycfQ | hypothetical protein/predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | 1169765 = | 24 (0.350) | intergenic (+50/+12) | ycfJ/ycfQ | hypothetical protein/predicted DNA‑binding transcriptional regulator | |||||
ATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTT > AP009048/1169695‑1169835 | aTTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCt > 1:3376645/1‑71 (MQ=255) tttGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttt > 1:6353944/1‑71 (MQ=255) ttGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttt < 1:1432944/70‑1 (MQ=255) gAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttttt < 1:5239984/70‑1 (MQ=255) aaTAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttt < 1:5007892/67‑1 (MQ=255) aTAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCttt < 1:1316886/66‑1 (MQ=255) aaCAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGc > 1:3428369/1‑70 (MQ=255) aCAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCg < 1:4021311/70‑1 (MQ=255) aaaGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACt < 1:1070024/71‑1 (MQ=255) ataACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTAttt > 1:1703501/1‑71 (MQ=255) aCAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCAc > 1:4658655/1‑71 (MQ=255) aCAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCAc < 1:7012312/71‑1 (MQ=255) ggCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGt < 1:2744778/71‑1 (MQ=255) cTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTc < 1:5023949/71‑1 (MQ=255) aCTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGc < 1:5247465/49‑1 (MQ=255) ctGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCa > 1:5332749/1‑70 (MQ=255) tGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCAt > 1:595561/1‑70 (MQ=255) cAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATa < 1:1304372/69‑1 (MQ=255) cAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATa < 1:1210735/69‑1 (MQ=255) aaTTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATa < 1:6471438/68‑1 (MQ=255) aTTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCg > 1:3653851/1‑60 (MQ=255) aTTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCg > 1:4779722/1‑60 (MQ=255) aTTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACg > 1:3533609/1‑71 (MQ=255) tttGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATa < 1:218705/66‑1 (MQ=255) tGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATaaa > 1:3524167/1‑66 (MQ=255) tGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCa < 1:1425151/70‑1 (MQ=255) GCCCCTCATTCGCTCAGGATGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAg > 1:6253630‑M1/1‑71 (MQ=255) CCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCaaa > 1:7472077‑M1/1‑69 (MQ=255) CCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTAtt > 1:4181922‑M1/1‑42 (MQ=255) CCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTAtt > 1:6804771‑M1/1‑42 (MQ=255) CCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTc < 1:3533341‑M1/71‑1 (MQ=255) cctcagcctgagcgaatgaggggcTTTTTTTGCGACTTATTTCACCAg < 1:4637524‑M2/24‑1 (MQ=255) cctcagcctgagcgaatgaggggcTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCg > 1:1223513‑M2/25‑71 (MQ=255) CCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATaa < 1:4274471‑M1/60‑1 (MQ=255) CCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCg > 1:500035‑M1/1‑71 (MQ=255) ctcagcctgagcgaatgaggggcTTTTTTTGCGACTTATTTCACCAg < 1:6178542‑M2/24‑1 (MQ=255) CTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACGAGTTCGGGCCATAAACGCAAAGTCGt > 1:6366649‑M1/1‑71 (MQ=255) CTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGt < 1:1063700‑M1/71‑1 (MQ=255) tcagcctgagcgaatgaggggcTTTTTTTGCGACTTATTTCACCAGtt > 1:4608637‑M2/23‑48 (MQ=255) TCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGtt < 1:4301639‑M1/71‑1 (MQ=255) CATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTc < 1:4594326‑M1/71‑1 (MQ=255) ATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTcc < 1:6997100‑M1/71‑1 (MQ=255) cGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCAc > 1:175269/1‑38 (MQ=255) gCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTcc < 1:2543286/67‑1 (MQ=255) gCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCa < 1:4384148/71‑1 (MQ=255) gCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCa < 1:5308695/71‑1 (MQ=255) cAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACAAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATc > 1:7589796/1‑71 (MQ=255) aGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCaaa > 1:5241345/1‑55 (MQ=255) aGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCaaa > 1:7346560/1‑55 (MQ=255) ggCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGtt > 1:7367758/1‑60 (MQ=255) ggCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGtt > 1:1947598/1‑60 (MQ=255) ggCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGtt > 1:6020430/1‑60 (MQ=255) gCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGc < 1:2894526/71‑1 (MQ=255) gCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGc < 1:3311609/71‑1 (MQ=255) gggcTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGt < 1:2518719‑M2/67‑1 (MQ=255) ggcTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGtt < 1:3994678‑M2/68‑1 (MQ=255) ggcTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGtt > 1:1449056‑M2/4‑71 (MQ=255) ggcTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGtt < 1:4003995‑M2/68‑1 (MQ=255) tttttttGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGt < 1:5057084/48‑1 (MQ=255) tttttttGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGt < 1:2848849/48‑1 (MQ=255) tttttttGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGttttt > 1:1661180/1‑71 (MQ=255) tttttttGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGttttt > 1:825996/1‑71 (MQ=255) | ATTTTGAATAACAAAGTATAACAAGGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTGCGACTTATTTCACCAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTT > AP009048/1169695‑1169835 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |