| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1284510 = | 98 (1.200) | 6 (0.080) | 3/90 | NT | 6.3% | coding (3070/3744 nt) | narG | nitrate reductase 1, alpha subunit |
| ? | AP009048 | 1284531 = | 87 (1.160) | coding (3091/3744 nt) | narG | nitrate reductase 1, alpha subunit | |||||
CCTGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1284582‑1284510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttCACGAGCTGATCCCATGGCGTACGCTCTCTGGTCGTCAGCAACTGTATCAGGATCACCAGTGGATGCGT > AP009048/1284531‑1284599 CCTGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCG > 1:6327969/1‑71CCTGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGC > 1:814279/1‑70 CTGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCGT > 1:1854377/1‑71 CTGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCGT < 1:5230310/71‑1 CTGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCG < 1:2235017/70‑1 CTGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCG < 1:3118815/70‑1 CTGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCG < 1:1362236/70‑1 TGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCGTT > 1:7556008/1‑71 TGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCGTT > 1:7195619/1‑71 TGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCGTT > 1:6269817/1‑71 ACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCG < 1:4317901/55‑1 ACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCG < 1:503932/55‑1 ACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCG < 1:3013535/55‑1 CGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCG > 1:1601840/1‑54 AACGTTGGTGTAACCGGCGTTCACGAGCTGATCCCATGGCGTACGCTCT < 1:4888121/49‑1 AACGTTGGTGTAACCGGCGTTCACGAGCTGATCCCATGGCGTACGCTCT < 1:4092035/49‑1 AACGTTGGTGTAACCGGCGTTCACGAGCTGATCCCATGGCGTACGCTCT < 1:7684910/49‑1 ACGTTGGTGTAACCGGCGTTCACGAGCTGATCCCATGGCGTACGCTCTCTGGT < 1:3038588/53‑1 TGGTGTAACGGGCGTTCACGAGCTGATCCCATGGCGTA < 1:4225452/38‑1 TGGTGTAACCGGCGTTCACGAGCTGATCCCATGGCGTA < 1:766003/38‑1 TTCACGAGCTGATCCCATGGCGTACGCTCTCTGGTCGTCAGCAACTGTATCAGGATCACCAGTGGATGCGT < 1:2968950/71‑1 TTCACGAGCTGATCCCATGGCGTACGCTCTCTGGTCGTCAGCAACTGTATCAGGATCACCAGTGGATGCGT < 1:2959689/71‑1 TTCACGAGCTGATCCCATGGCGTACGCTCTCTGGTCGTCAGCAACTGTATCAGGATCACCAGTGGATGCGT < 1:2523049/71‑1 TCACGAGCTGATCCCATGGCGTACGCTCTCTGGTCGTCAGCAACTGTATCAGGATCACCAGTGGAT < 1:4969760/66‑1 CCTGATACAGTTGCTGACGACCAGAGAGCGTACGCCATGGGATCAGCTCGTGAACGTTGGTGTAACCGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1284582‑1284510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttCACGAGCTGATCCCATGGCGTACGCTCTCTGGTCGTCAGCAACTGTATCAGGATCACCAGTGGATGCGT > AP009048/1284531‑1284599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |