| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1356225 = | 89 (1.090) | 11 (0.150) | 3/88 | NT | 11.8% | coding (8/891 nt) coding (960/966 nt) |
sapC sapB |
predicted antimicrobial peptide transporter subunit predicted antimicrobial peptide transporter subunit |
| ? | AP009048 | 1356244 = | 84 (1.150) | coding (941/966 nt) | sapB | predicted antimicrobial peptide transporter subunit | |||||
TTATTGTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1356298‑1356225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttaTGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCA > AP009048/1356244‑1356312 TTATTGTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCC < 1:4483986/71‑1 TATTGTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCCT > 1:2377815/1‑71 ATTGTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCCT < 1:2903210/70‑1 TTGTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCCTT < 1:774174/70‑1 TTGTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCCTT < 1:6508527/70‑1 TTGTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCCTT < 1:6212277/70‑1 TGTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCCTTA < 1:4585053/70‑1 TGTTAACGTGATTTCTGATATTTTGGGTGCAATGGCTAACCCTCTGAAACATAAGGAATGGTATGCCTT < 1:3796761/69‑1 GTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGC > 1:7095816/1‑65 GTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGC > 1:5357030/1‑65 TATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCC > 1:124545/1‑49 TATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCC > 1:411486/1‑49 TAAGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCAT < 1:4318641/39‑1 TAAGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCAT < 1:4200277/39‑1 AAGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCAC > 1:515810/1‑62 AAGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCAC > 1:1100721/1‑62 AAGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAA > 1:4830553/1‑49 AAGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAA > 1:5620359/1‑49 AGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCATGG > 1:5025723/1‑39 AGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCATGG > 1:3822497/1‑39 AGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCATGG > 1:3056182/1‑39 AGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCATGG > 1:262671/1‑39 AGGAATGGTATGCCTTATGTTTCAGAGGGTTAGCCATGG > 1:7097144/1‑39 CCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAG > 1:5059177/1‑71 CCTTATGTTTCAGAGGGTTAGCCATGGCACCCAAA < 1:7895630/35‑1 ATGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCA < 1:2363232/70‑1 TTATTGTTAACGTGATTTCTGATATTTTGGGTGCCATGGCTAACCCTCTGAAACATAAGGAATGGTATGCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1356298‑1356225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttaTGTTTCAGAGGGTTAGCCATGGCACCCAAAATATCAGAAATCACGTTAACAATAATGACCAGTGAGCCA > AP009048/1356244‑1356312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |