| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1376300 | 60 (0.740) | 6 (0.080) | 4/86 | NT | 10.4% | coding (497/843 nt) | ycjP | predicted sugar transporter subunit |
| ? | AP009048 | = 1376317 | 51 (0.710) | coding (514/843 nt) | ycjP | predicted sugar transporter subunit | |||||
AGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1376228‑1376300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgaTCTCATCGGGGATGGTGTCGAAGTAGCTTTTCAGCATAAACACGGCGGTGGGCAGAGTTTGCGTCACCA < AP009048/1376317‑1376249 AGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTC < 1:7900656/71‑1 TGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGA < 1:5549906/70‑1 TGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTC < 1:3331875/68‑1 CATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGA < 1:1111600/54‑1 ATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTAC < 1:1559723/48‑1 TGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTC > 1:140390/1‑50 TGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTC > 1:3669912/1‑50 TGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACT > 1:7045826/1‑48 TGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGATCTCATCGGGGATGGTGTCG < 1:7349773/69‑1 TGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGATCTCATCGGGGATGGTGTCG < 1:867124/69‑1 CAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGATCTCATCGGGGATGGTGTCGAAG < 1:5170074/67‑1 AACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGATCTCATCGGGGATGGTGTCGA < 1:531647/63‑1 ACCGCCGTGTTTATGCTGAAAAGCTACTTCGATCTCATCGGGGA > 1:7725812/1‑44 ACCGCCGTGTTTATGCTGAAAAGCTACTTCGATCTCATCGGGGA > 1:1587199/1‑44 TTCGATCTCATCGGGGATGGTGTCGAAGTAGCTTTTCAGCATAAACACGGCGGTGGGCAGAGTTTGCGTCA > 1:6369873/1‑71 TTCGATCTCATCGGGGATGGTGTCGAAGTAGCTTTTCAGCATAAACACGGCG > 1:5750987/1‑52 CGATCTCATCGGGGATGGTGTCGAAGTAGCTTTTCAGCATAAACACGGCGGTGGGCAGAGTTTGCGTCAC > 1:545693/1‑70 CGATCTCATCGGGGATGGTGTCGAAGTAGCTTTTCAGCATAAACACGGCGGTGGGCAGAGTTTGCGTCAC > 1:7813652/1‑70 GATCTCATCGGGGATGGTGTCGAAGTAGCTTTTCAGCATAAACACGGCGGTGca < 1:3954685/54‑3 GATCTCATCGGGGATGGTGTCGAAGTAGCTTTTCAGCATAAACACGGCGGTGGGCAGAGTTTGCGTCACCA > 1:827497/1‑71 AGATGGCGCTGATCATCACCATGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1376228‑1376300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgaTCTCATCGGGGATGGTGTCGAAGTAGCTTTTCAGCATAAACACGGCGGTGGGCAGAGTTTGCGTCACCA < AP009048/1376317‑1376249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |