| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1376300 | 60 (0.740) | 6 (0.080) | 4/86 | NT | 10.4% | coding (497/843 nt) | ycjP | predicted sugar transporter subunit |
| ? | AP009048 | = 1376317 | 51 (0.710) | coding (514/843 nt) | ycjP | predicted sugar transporter subunit | |||||
TGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGC > AP009048/1376249‑1376387 | tGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGAtc > 1:827497‑M2/1‑69 (MQ=255) gTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGAtcg > 1:545693‑M2/1‑67 (MQ=255) gTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGAtcg > 1:7813652‑M2/1‑67 (MQ=255) tGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGAtcgaa > 1:6369873‑M2/1‑66 (MQ=255) gCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGaagaag < 1:1143647/71‑1 (MQ=255) aaCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAgcg > 1:1867965/1‑70 (MQ=255) aaCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAgc < 1:1388418/69‑1 (MQ=255) aCTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCgaagaa < 1:5701315/66‑1 (MQ=255) ctctGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGaagaag > 1:1062899/1‑66 (MQ=255) ctctGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAgc < 1:4107288/67‑1 (MQ=255) tGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGGGGCgat > 1:3485893/1‑70 (MQ=255) tgcacCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGAtc < 1:3954685‑M2/52‑3 (MQ=255) cACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGatgatg > 1:7470487/1‑70 (MQ=255) aCCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATgatgga < 1:7601481/71‑1 (MQ=255) aCCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATgatgga > 1:38263/1‑71 (MQ=255) aCCGCCGTGTTTATGCTGAAAACCTACTTCGACACCATCCCCGATgaga > 1:1600948/1‑49 (MQ=255) ccgccgTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCgaaga < 1:4641622/55‑1 (MQ=255) ccgccgTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCgaaga < 1:4619078/55‑1 (MQ=255) ccgccgTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCgaaga < 1:7580828/55‑1 (MQ=255) cgccgTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGAtcgaa > 1:5750987‑M2/1‑47 (MQ=255) cgccgTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATgttggatg > 1:2378493/1‑71 (MQ=255) cgccgTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATgatggatg > 1:5162829/1‑71 (MQ=255) cgccgTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATgatggatg > 1:1644336/1‑71 (MQ=255) cgccgTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATgatggatg > 1:6908202/1‑71 (MQ=255) cgccgTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATgatggatg > 1:6944270/1‑71 (MQ=255) gccgTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATgatggatg < 1:6639774/70‑1 (MQ=255) gtgtTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCt < 1:3736506/71‑1 (MQ=255) gtgtTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCt < 1:145323/71‑1 (MQ=255) gtgtTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCt > 1:983363/1‑71 (MQ=255) tgtTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAgcg < 1:5963467/53‑1 (MQ=255) tgtTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTc < 1:2578774/71‑1 (MQ=255) tttATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGc > 1:1524627/1‑66 (MQ=255) tGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAAcc < 1:5929463/69‑1 (MQ=255) tGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCg < 1:7041886/70‑1 (MQ=255) tGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGt > 1:5106385/1‑71 (MQ=255) tGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGt > 1:3726870/1‑71 (MQ=255) cTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCt > 1:3345490/1‑71 (MQ=255) aaaaGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCgatga > 1:186564/1‑49 (MQ=255) aaaaGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCgatga > 1:2362506/1‑49 (MQ=255) aaaaGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTc < 1:7744500/60‑1 (MQ=255) aaaaGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGc > 1:1607630/1‑70 (MQ=255) aaaaGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGc > 1:6237457/1‑70 (MQ=255) aaaaGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCa < 1:203662/71‑1 (MQ=255) aaaGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCa > 1:4325680/1‑70 (MQ=255) aGCTACTTCGACACCATCGCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAAt < 1:467756/71‑1 (MQ=255) cTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTa < 1:6156888/71‑1 (MQ=255) tACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTg > 1:240519/1‑63 (MQ=255) tACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTa < 1:995058/70‑1 (MQ=255) aCTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATc > 1:4581445/1‑71 (MQ=255) cTTCGACACCATCCCCGATGAGAtcgaagtagcttttcagcataaacacggcggtgggcagagtttg < 1:5170074‑M2/67‑45 (MQ=255) cTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCt > 1:6529096/1‑71 (MQ=255) cTTCGACACCATCACCGATGAGATCGATGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCt > 1:3972224/1‑71 (MQ=255) ttCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGatggatgg < 1:4103384/47‑1 (MQ=255) ttCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGatggatgg < 1:5186782/47‑1 (MQ=255) ttCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAAcc > 1:4498889/1‑55 (MQ=255) ttCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAAcc < 1:2696222/55‑1 (MQ=255) ttCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAAcc < 1:3989915/55‑1 (MQ=255) ttCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCaa < 1:5655882/63‑1 (MQ=255) ttCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCaa < 1:2182368/63‑1 (MQ=255) tCGACACCATCCCCGATGAGAtcgaagtagcttttcagcataaacacggcggtgggcagagtt < 1:531647‑M2/63‑43 (MQ=255) tCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCtt > 1:6245571/1‑70 (MQ=255) tCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTc > 1:521484/1‑71 (MQ=255) tCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTc > 1:1337866/1‑71 (MQ=255) cGACACCATCCCCGATGAGAtcgaagtagcttttcagcataaacacggcggtgggcagagtttgcgtca < 1:867124‑M2/69‑50 (MQ=255) cGACACCATCCCCGATGAGAtcgaagtagcttttcagcataaacacggcggtgggcagagtttgcgtca < 1:7349773‑M2/69‑50 (MQ=255) acacCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGc < 1:4321657/71‑1 (MQ=255) tCCCCGATGAGAtcgaagtagcttttcagcataaacacggcggt > 1:7725812‑M2/1‑12 (MQ=255) tCCCCGATGAGAtcgaagtagcttttcagcataaacacggcggt > 1:1587199‑M2/1‑12 (MQ=255) tCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCt < 1:6118984/60‑1 (MQ=255) tCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCAcc > 1:6751796/1‑71 (MQ=255) ccccGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAAtt < 1:954913/55‑1 (MQ=255) cccGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGt > 1:7578335/1‑45 (MQ=255) ccGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTg < 1:5087803/71‑1 (MQ=255) aTGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGt > 1:978137/1‑41 (MQ=255) tGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGt < 1:2056658/71‑1 (MQ=255) tGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGt < 1:1285385/71‑1 (MQ=255) agaTCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGtt < 1:7450086/70‑1 (MQ=255) agaTCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGtt < 1:1167728/70‑1 (MQ=255) agaTCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTg < 1:4030379/71‑1 (MQ=255) gaTCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCaaa > 1:6045301/1‑44 (MQ=255) aTCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGcc < 1:6391834/65‑1 (MQ=255) aTCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGc < 1:653848/71‑1 (MQ=255) | TGGTGACGCAAACTCTGCCCACCGCCGTGTTTATGCTGAAAAGCTACTTCGACACCATCCCCGATGAGATCGAAGAAGCGGCGATGATGGATGGCCTCAACCGTCTGCAAATTATCTTCCGCATCACCGTGCCGTTGGC > AP009048/1376249‑1376387 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |