| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1421954 = | 121 (1.490) | 6 (0.080) | 4/88 | NT | 5.7% | coding (2/477 nt) | racR | predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | 1421993 = | 90 (1.230) | intergenic (‑38/‑86) | racR/ydaS | predicted DNA‑binding transcriptional regulator/predicted DNA‑binding transcriptional regulator | |||||
TCAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1422026‑1421954‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaatCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGT > AP009048/1421993‑1422062 TCAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCA < 1:4657602/71‑1TCAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC < 1:716396/70‑1 CAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCAA > 1:4858682/1‑71 CAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCAA > 1:3003208/1‑71 CTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCA < 1:4189336/63‑1 CTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCA < 1:5538168/63‑1 TAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCA > 1:1560839/1‑48 TAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC < 1:6738055/47‑1 TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC < 1:7268219/41‑1 TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC < 1:7418512/41‑1 TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC < 1:3184477/41‑1 TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC < 1:7619531/41‑1 TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC < 1:4502251/41‑1 TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC < 1:1591599/41‑1 GGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAG < 1:7393639/38‑1 GGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAG < 1:5672312/38‑1 GGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAG < 1:4832405/38‑1 GGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAG < 1:5307556/38‑1 GGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAG < 1:4338155/38‑1 CTAATGTAATGCGCATAGGAGAATATTAAGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAA < 1:1739201/71‑1 aGTAATGCGCATAGGAGAATATTAAGCAATCCCTACCCTTACTGCATT > 1:5721178/2‑48 TGTAATGCGCATAGGAGAATATTAAGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGC > 1:969958/1‑71 TAATGCGCATAGGAGAATATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCG < 1:5664628/70‑1 ATGCGCATAGGAGAATATTAAGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTT < 1:4053983/70‑1 ATGCGCATAGGAGAATATTAAGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTT < 1:2041606/70‑1 GCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGC < 1:4823130/46‑1 GCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGC < 1:412229/46‑1 GCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGC < 1:7107967/46‑1 CAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACA < 1:2347967/40‑1 ATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATA > 1:2764608/1‑61 TCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGT < 1:5686952/71‑1 TCAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1422026‑1421954‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaatCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGT > AP009048/1421993‑1422062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |