New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 1421954 =121 (1.490)6 (0.080) 4/88 NT 5.7% coding (2/477 nt) racR predicted DNA‑binding transcriptional regulator
?AP009048 1421993 = 90 (1.230)intergenic (‑38/‑86) racR/ydaS predicted DNA‑binding transcriptional regulator/predicted DNA‑binding transcriptional regulator

TCAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1422026‑1421954
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaatCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGT  >  AP009048/1421993‑1422062
                                                                                                                                               
TCAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCA                                                                          <  1:4657602/71‑1
TCAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC                                                                           <  1:716396/70‑1
 CAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCAA                                                                         >  1:4858682/1‑71
 CAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCAA                                                                         >  1:3003208/1‑71
        CTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCA                                                                          <  1:4189336/63‑1
        CTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCA                                                                          <  1:5538168/63‑1
                       TAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCA                                                                          >  1:1560839/1‑48
                       TAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC                                                                           <  1:6738055/47‑1
                             TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC                                                                           <  1:7268219/41‑1
                             TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC                                                                           <  1:7418512/41‑1
                             TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC                                                                           <  1:3184477/41‑1
                             TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC                                                                           <  1:7619531/41‑1
                             TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC                                                                           <  1:4502251/41‑1
                             TAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGC                                                                           <  1:1591599/41‑1
                               GGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAG                                                                            <  1:7393639/38‑1
                               GGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAG                                                                            <  1:5672312/38‑1
                               GGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAG                                                                            <  1:4832405/38‑1
                               GGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAG                                                                            <  1:5307556/38‑1
                               GGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAG                                                                            <  1:4338155/38‑1
                                       CTAATGTAATGCGCATAGGAGAATATTAAGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAA                                   <  1:1739201/71‑1
                                           aGTAATGCGCATAGGAGAATATTAAGCAATCCCTACCCTTACTGCATT                                                      >  1:5721178/2‑48
                                           TGTAATGCGCATAGGAGAATATTAAGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGC                               >  1:969958/1‑71
                                             TAATGCGCATAGGAGAATATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCG                              <  1:5664628/70‑1
                                               ATGCGCATAGGAGAATATTAAGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTT                            <  1:4053983/70‑1
                                               ATGCGCATAGGAGAATATTAAGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTT                            <  1:2041606/70‑1
                                                                    GCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGC                               <  1:4823130/46‑1
                                                                    GCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGC                               <  1:412229/46‑1
                                                                    GCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGC                               <  1:7107967/46‑1
                                                                     CAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACA                                    <  1:2347967/40‑1
                                                                       ATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATA             >  1:2764608/1‑61
                                                                        TCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGT  <  1:5686952/71‑1
                                                                                                                                               
TCAATAGGCTGTGCCTAATGCAGTAAGGGTAGGGATTGCCTAATGTAATGCGCATAGGAGAATATTAAGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/1422026‑1421954
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaatCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGTGT  >  AP009048/1421993‑1422062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.