| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1561486 = | 103 (1.260) | 11 (0.150) | 3/86 | NT | 11.3% | coding (139/897 nt) | ddpC | D‑Ala‑D‑Ala transporter subunit |
| ? | AP009048 | 1561513 = | 83 (1.160) | coding (112/897 nt) | ddpC | D‑Ala‑D‑Ala transporter subunit | |||||
AAACTGGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1561561‑1561486‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgaCTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGCGT > AP009048/1561513‑1561579 AAACTGGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATT > 1:724973/1‑71AAACTGGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATT > 1:630977/1‑71AAACTGGTATGGATGCTGAAAGGCAGTC‑‑CTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGA < 1:2125127/71‑1 AACTGGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTG < 1:5623355/71‑1 AACTGGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATT > 1:6302589/1‑70 GGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATT < 1:7388661/66‑1 TGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTG < 1:3859006/63‑1 GATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGAT > 1:218856/1‑63 GATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGAT > 1:3593356/1‑63 CAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATG < 1:7780606/52‑1 CAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATG < 1:7771168/52‑1 TCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATT > 1:1320439/1‑40 TCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATT > 1:6679175/1‑40 TCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATT > 1:6564682/1‑40 TCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATT > 1:2472626/1‑40 TCATCATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATAC > 1:607866/1‑70 TCATCATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCAT > 1:3208932/1‑64 TCATCATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTT < 1:5229755/58‑1 TCATCATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTT < 1:4723081/58‑1 TCATCATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTT < 1:6344383/58‑1 CATCATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTT < 1:1660360/57‑1 ATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTT < 1:568462/70‑1 ATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTT < 1:4842063/70‑1 ATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTT < 1:6872523/70‑1 ATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTT < 1:7031717/70‑1 ATTGTATTAATGCTATTGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTT < 1:7915620/70‑1 TGATGCCTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGC > 1:1538118/1‑71 TGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGC > 1:4043853/1‑71 TGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGC > 1:1295362/1‑71 TGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACC > 1:804087/1‑61 GATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGCG > 1:1433294/1‑71 ATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGCGT < 1:2385834/71‑1 AAACTGGTATGGATGCTGAAAGGCAGTCCGCTCACCGTGACCAGCGCAGTCATCATTGTATTAATGCTATTGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1561561‑1561486‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgaCTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATACCAGTTTTGCACCGTTAAATCGCGT > AP009048/1561513‑1561579 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |